#reassemble_bins.sh脚本修改mkdir-p /tmp/$(basename ${out}).tmp checkm lineage_wf -x fa ${out}/reassembled_bins ${out}/reassembled_bins.checkm -t $threads --tmpdir /tmp/$(basename${out}).tmp --pplacer_threads $p_threadsif[[ ! -s ${out}/reassembled_bins.checkm/storage/bin_stats_...
提纯Bin_refinement:对多种Bin结果评估和综合分析,获得更好的结果; 重组装Reassemble_bins:利用原始序列和评估软件二次组装,改善Bin的N50、完整度4) 定量Quant_bins: 估计样品中每个bin的丰度并热图展示 气泡图Blobology: blobplots可视化群体的contigs的物种和Bin分布 物种注释Classify_bins: 对Bin物种注释 基因注释Ann...
metawrap quant_bins -b BIN_REFINEMENT/metaWRAP_bins -t 8 -o QUANT_BINS -a ASSEMBLY/final_assembly.fasta CLEAN_READS/ERR*fastq 结果包括bin丰度热图QUANT_BINS/genome_abundance_heatmap.png。 如果想自己画图,原始数据位于QUANT_BINS/abundance_table.tab Genomic bins ERR011349 ERR011348 ERR011347 bin....
metawrap quant_bins -b BIN_REFINEMENT/metaWRAP_bins -t 8 -o QUANT_BINS -a ASSEMBLY/final_assembly.fasta CLEAN_READS/ERR*fastq 结果包括bin丰度热图QUANT_BINS/genome_abundance_heatmap.png。 如果想自己画图,原始数据位于QUANT_BINS/abundance_table.tab Genomic bins ERR011349 ERR011348 ERR011347bin.9...
metawrap quant_bins -b BIN_REFINEMENT/metaWRAP_bins -t 8 -o QUANT_BINS -a ASSEMBLY/final_assembly.fasta CLEAN_READS/ERR*fastq 结果包括bin丰度热图QUANT_BINS/genome_abundance_heatmap.png。 如果想自己画图,原始数据位于QUANT_BINS/abundance_table.tab ...
quant_bins 定量Quantify the abundance of each bin across samples blobology 可视化Blobology module kraken 物种注释KRAKEN module 想查看每个模块的具体参数,如组装metawrap assembly -h Usage: metawrap assembly [options] -1 reads_1.fastq -2 reads_2.fastq -o output_dir ...