CGDB: a database of membrane protein/lipid interactions by coarse- grained molecular dynamics simulations. Molecular Mem- brane Biology 2008; 25:662-669.Chetwynd AP, Scott KA, Mokrab Y, Sansom MS. CGDB: a database of membrane protein/lipid interactions by coarse-grained molecular dynamics ...
Membrane protein function and stability has been shown to be dependent on the lipid environment. Recently, we developed a high-throughput computational approach for the prediction of membrane protein/lipid interactions. In the current study, we enhanced this approach with the addition of a new measur...
Databases, ProteinA specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and ... R Schwacke,A Schneider,EVD Graaff,... - 《Plant Physiology》 被引量: 1112发表: 2003年 Conserved ERAD-Like Quality Control of a Plant Pol...
The Membrane Protein Data Bank (MPDB) is an online, searchable, relational database of structural and functional information on integral, anchored and peri
Using the information present in the Protein Data Bank and respective journal articles, a database of crystallization conditions was generated for all alpha helical membrane proteins up to and including 2012 [83] (Fig. 2 inset). This database has provided unique insights into many aspects ...
Protein Data Bank 4NH2 Data deposits Atomic coordinates and structure factors for the crystal structure have been deposited with the Protein Data Bank (PDB) under accession code 4NH2. References Singer, S. J. & Nicolson, G. L. The fluid mosaic model of the structure of cell membranes. Sci...
The Membrane Protein Data Bank (MPDB) is an online, searchable, relational database of structural and functional information on integral, anchored and peripheral membrane proteins and peptides. Data originates from the Protein Data Bank and other databases, and from the literature. Structures are ba...
The membrane protein packing database (MP:PD) (http://proteinformatics.charite.de/mppd) is a database of helical membrane proteins featuring internal atomic packing densities, cavities and waters. Membrane proteins are not tightly packed but contain a considerable number of internal cavities that di...
Three structure-specific domains, mostly found in eukaryotic cells, have been identified for membrane association and activation of amphitropic proteins [21]. The C1 lipid clamp is a conserved cysteine-richprotein domainthat binds lipids and is found in protein kinasesC and otherenzymesregulated by...
structures of all-alpha type membrane proteins have made valuable contributions to understanding structure–function relationships in membrane proteins. These range from the first insights into the function of exciting individual proteins to an in-depth knowledge of protein function from entire biological ...