Databases, ProteinA specialized database (DB) for Arabidopsis membrane proteins, ARAMEMNON, was designed that facilitates the interpretation of gene and ... R Schwacke,A Schneider,EVD Graaff,... - 《Plant Physiology》 被引量: 1112发表: 2003年 Conserved ERAD-Like Quality Control of a Plant Pol...
The only plant protein among these is the light-harvesting complex II—thylakoid membrane chlorophyll a–b binding protein AB80 precursor from Pisum sativum (Swiss-Prot P07371) [39]. The database can be searched by full-text, AMPDB—Arabidopsis Mitochondrial Protein Database This database lists...
protein identification are reviewed.Furthermore,a review is given about the progress in plant membrane proteomics including plasma membrane,tonoplast and other membrane system.The database for the proteomics is introduced as well.Finally,the prospect of the plant membrane proteomics is raised for ...
The PlantMWpIDB database comprises 6.115 million proteins sequences present in the plant kingdom. PlantMWpIDB has a search engine that allows one to explore a virtual 2D map of the global, plant proteome, and search by protein name, keyword, accession number, and protein sequence. Construction...
In addition to gene families, we also analysed the number of domains and domain combinations, based on the Pfam database12, in proteins of the 15 species studied. For domain combinations, the numbers, positions and order of domains in each protein were ignored (Supplementary Table 4). For ea...
1). Actually, according to Web of Science (WOS) database, 74% of publications related to PGPB have been published in the “Agriculture” research area (WOS, 2023). These data reflect the interest of the scientific community to understand PGPB modes of action, and to use this knowledg...
In this study, we employed the dataset for peroxisomal proteins created by Anteghini et al. [29] in 2021. They conducted a search in the UniprotKB/SwissProt database to collect 327 sequences of peroxisomal membrane proteins. Applying the CD-HIT program, they selected 162 protein sequences at...
functional database and KEGG (https://www.genome.jp/kegg/) pathway database were used to perform enrichment analysis on the differential gene set. Metabolite extraction Pepper leaf tissue was freeze-dried and ground into powder with a grinder (30 Hz, 1.5 min), and 50 mg powder was ...
This set of proteins was used as a “plasma membrane protein database” for a comparison with DRM proteins. Isoelectric Point— The theoretical isoelectric points of all the proteins identified range from 4 to 12 and are mainly represented in two groups: an acidic group (pH 5–7) and a ...
Approximately 628 (1.79%) transcripts were assigned to the cluster of “cell wall/membrane/envelope biogenesis”. On the basis of KEGG pathway assignment, 126 pathways (Table S6) were assigned, with the majority of these transcripts involved in the pathways of protein processing in the endoplasmic...