exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes. Nucleic Acids Res. 2018 Jan 4;46(D1):D106-D112. doi: 10.1093/nar/gkx891. PMID: 30053265; PMCID: PMC5753357. 这期关于exoRBase数据库加餐就到这里!食不厌精,脍不厌细,美食需要用心烹饪,更需要用心细品,小伙伴们...
该数据库由复旦大学上海肿瘤研究所黄胜林研究员团队于2018年1月发表在Nucleic Acids Research杂志,文章题为:exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes(下图)。 exoRBase数据库为外泌体研究提供了非常好用...
该数据库由复旦大学上海肿瘤研究所黄胜林研究员团队于2018年1月发表在Nucleic Acids Research杂志,文章题为:exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes(下图)。 exoRBase数据库为外泌体研究提供了非常好用的查询平台,数据库还提供了数据下载和上传接口,给外泌体领域的研究带来很大...
Shengli Li, Yuchen Li, Bing Chen, et al. exoRBase: a database of circRNA, lncRNA and mRNA in human blood exosomes.Nucleic Acids Research(IF=10.162). 2017.
全转录组LncRNA与CircRNA测序分析策略
[188]. Furthermore, tools such as CircCode, CircPro and Circular RNA Database (CircRNADb) compile information on IRES and ORFs of circRNAs, aiding in the prediction of their coding potential [189,190,191]. Moreover, tools such as IRESite (University of California, Berkeley, California, USA...
The STRING database was used to establish the potential PPI network in CAVD. The threshold was an interaction score > 0.4, and the nodes not connected to the main network were excluded, after which a PPI network with 69 edges and 38 nodes was obtained. According to the MCC algorithm,...
To study enrichment function for the upregulated and downregulated mRNAs, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses were performed using the Metascape database, respectively. Based on the STRING database and Cytoscape software 3.9.1, ...
NcRNA-encoded proteins have attracted a great deal of scientific curiosity. Research has established the existence and confirmed the importance of ncRNA-encoded functional peptides. However, the assessment of ncRNA coding potential is difficult [79]. The database used to predict interspecies conservati...
The Starbase database was used to predict the targets of the DE miRNAs, which included 199,946 DE miRNA–DE mRNA pairs and 1,456 DE miRNA–lncRNA pairs (Supplementary Table S5). Additionally, miRanda software was used to identify 29,237 DE miRNA–DE mRNA pairs; 643,159 DE miRNA–lnc...