Human Commons Cell Atlas This GitHub repository for the Human Commons Cell Atlas contains uniformly preprocessed and filtered count matrices and cell type assignments that span 29 Human organs as well as marker gene lists for 31 Human organs. The count matrices are in thedatafolder and the marker...
The Human Cell Atlas: Metadata Standards The Human Cell Atlas metadata-schema repo contains the schema specifications and supporting documentation for the HCA metadata standards. Table of Contents Documentation Metadata schemas and examples Contributing ...
Here we created a comprehensive molecular atlas of the human brain vasculature using single-cell RNA sequencing (scRNA-seq) analysis in the developing, adult/control and diseased human brain (Fig. 1a, Extended Data Fig. 1 and Supplementary Methods). We identified extensive heterogeneity among ECs ...
While single-cell technologies have greatly advanced our comprehension of human brain cell types and functions, studies including large numbers of donors and multiple brain regions are needed to extend our understanding of brain cell heterogeneity. Integrating atlas-level single-cell data presents a chan...
Using'localHub=TRUE'If offline,please also see BiocManager vignette section on offline use Errorin.updateHubDB(hub_bfc,.class,url,proxy,localHub):Invalid Cache:sqlite file Hub has not been added to cache Run againwith'localHub=FALSE'In addition:Warning message:HumanPrimaryCellAtlasData不再有用...
Data sets were selected based on the following criteria: (1) chip platform (only data from Affymetrix Human Genome U133 Plus 2.0 expression arrays was included); (2) primary cell; (3) cell-subset studied; (4) availability of raw data (.cel) and sample description files. Quality control ...
Around 5 years ago, Aviv Regev, PhD, realized that it would soon be possible to map all of the cell types in the human body. An atlas of cells across all tissues and organs would undoubtedly advance the scientific community’s understanding of biology and disease and open doors to ...
Sensitization of trigeminal ganglion neurons contributes to primary headache disorders such as migraine, but the specific neuronal and non-neuronal trigeminal subtypes that are involved remain unclear. We thus developed a cell atlas in which human and mouse trigeminal ganglia are transcriptionally and epig...
An interactive cell browser enabling users to view these data and perform interactive queries can be found at: http://retinalstemcellresearch.co.uk/CorneaCellAtlas/. scRNA-seq analysis reveals novel markers for LPCs The scRNA-Seq analysis revealed an interesting LPC cluster in the limbal ...
Shared artifacts concerning the Human Cell Atlas (HCA) Data Coordination Platform (DCP) - HumanCellAtlas/dcp2