如何撰写研究文章的介绍 | How to write an introduction of a research article 1184 3 19:18 App key社op但人物名字少于4跳过,大于4复活 102 -- 4:27 App How to create a ballon plot? 如何创建气球图 30 -- 3:31 App How to draw KEGG pathway summary plot | 如何绘制KEGG通路汇总图 8 --...
script importosimportjsonimportreclassKOParser(object):def__init__(self,map):self.map=mapdefjson_parser(self):# check the existance of json fileifos.path.exists(self.map):withopen(self.map,'r')asf:ko_list=[]# convert json to dictmap_dict=json.load(f)# print(type(map_dict)) dictmap...
In essence you can use the enrichKEGG function (since you have a list of KEGG ids), and use it with organism = "cpd" (because the input are 'compounds'. > library(clusterProfiler) > > input <- data.frame("name"=c("Pyruvate","Acetyl-CoA","2OG","Glycine","Succinate","Aspartate"...
Moreover, aberrant interactions between Sertoli cells and FGCs disrupt the migration of late FGCs to the basement membrane in KS. Notably, inhibition of the TGF-β pathway improves the differentiation of KS FGCs. Our findings elucidate how the extra X chromosome impairs the development of male ...
ABC transporters, and pentose phosphate pathway were upregulated, while four metabolites such as valine, leucine and isoleucine biosynthesis, and propanoate metabolism pathway were downregulated in AMF addition groups than in non-AMF addition groups according to enrichment plots (pvalue < 0.05) (...
The above are based on how they are known to alter other bacteria from published studies. Next I swing over to KEGG to see which probiotics can provide metabolites and enzymes that the person is low in. This is a complimentary approach that does not depend on a study being done, rather ...
to 2.1 × 105predicted coding sequences of the 78 rMAGS. Per time-point, on average 1.5 × 104 ± 4.5 × 103(s.d.) spectral matches, i.e., on average 94% of all rMAG-associated matches could be assigned to genes with predicted functions, i.e., assigned KEGG ...
To elucidate the effect of L. reuteri treatment on host cell physiology, we performed RNAseq at multiple time points during in vitro osteoclastogenesis and established that L. reuteri downregulated several KEGG pathways including osteoclast differentiation as well as TNF-α, NF-κB, and MAP kinase ...
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IL-17A and IFN-γ expression in mouse CD4+ T cells activated under Th1 and Th17 polarizing conditions and transduced with MIGR1, REV-ERBα or REV-ERBβ retroviral vectors. Data are representative of 3 independent experiments with triplicate wells for each condition. (F) KEGG pathway analysis ...