Among the paths toward cell death, anoikis (homelessness) is the predominant pathway when cells lose integrin-mediated cell-to-extracellular matrix interactions [2, 4]. These anchorage-independent cells can be either together or individuals without cadherin-mediated cell-to-cell interactions [5,6,7...
Because the MetaCyc reactions are based on regrouping the predicted EC numbers the resulting pathway predictions also partially correspond to the original read counts. To understand this, it's important understand how the EC gene family abundances are calculated per ASV: by default, the read depth...
The cover rate is calculated as the ratio of the numbers of enriched genes to the total number of genes in a given pathway. The color and size of the dots denote the organs and enriched gene numbers, respectively. Only the pathways enriched in at least two organs are presented. The pink...
Moreover, aberrant interactions between Sertoli cells and FGCs disrupt the migration of late FGCs to the basement membrane in KS. Notably, inhibition of the TGF-β pathway improves the differentiation of KS FGCs. Our findings elucidate how the extra X chromosome impairs the development of male ...
\t'+anno# print(ko)info=map_name+'\t'+map_l_1_name+'\t'+pathway_name+'\t'+ko ko_list.append(info)except:continuereturnko_listelse:print('Error: Json file does not exist.')defsave_data(self,result,file_name):# convert list to string for writing as fileforinfoinresult:kos=''...
Kanehisa M, Goto S (2000) KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28(1):27–30 ArticleCASPubMedPubMed CentralGoogle Scholar Karp PD, Billington R, Caspi R, Fulcher CA, Latendresse M, Kothari A, Keseler IM, Krummenacker M, Midford PE, Ong Q, Ong WK, Paley...
to 2.1 × 105predicted coding sequences of the 78 rMAGS. Per time-point, on average 1.5 × 104 ± 4.5 × 103(s.d.) spectral matches, i.e., on average 94% of all rMAG-associated matches could be assigned to genes with predicted functions, i.e., assigned KEGG ...
a What is the function of estrogen, the type of cell in which it is made, and the specific manner in which it acts as a signaling molecule, including the receptor it binds to in the Kegg Pathway? What physiological reactions in the human body would autonomi...
to 2.1 × 105predicted coding sequences of the 78 rMAGS. Per time-point, on average 1.5 × 104 ± 4.5 × 103(s.d.) spectral matches, i.e., on average 94% of all rMAG-associated matches could be assigned to genes with predicted functions, i.e., assigned KEGG ...
Fig. 6. Based on the results of transcriptome analysis, a framework of the response mechanism of prey ciliates to predation risk cues was established, which primarily demonstrated the critical regulation process of the KEGG pathway interfered with by predation risk cues and the corresponding biological...