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aMultidimensional scaling (MDS) of Jaccard distances for the functional repertoire (presence of KEGG ortholog groups [KOs]) for each rMAG. Ellipses containing 95% (inner) or 99% (outer) of cluster-assigned data points are shown resulting in four distinct functional clusters (FunCs). Colors indi...
A collection of genes are expressed in all tissues/cells to maintain basic cellular functions, traditionally known as housekeeping (HK) genes, whereas others are specialized to perform unique functions in differentiated tissues/cells, known as tissue-specific (TS) genes. To characterize cell-specific...
DEG functions were explored through GO and KEGG pathway analysis and the terms which q-value ≤0.05 were defined as significant enriched. This was performed to identify significantly enriched metabolic pathways. 2.4. Proteome with ITRAQ and Data Analysis The samples used in RNA-seq were used to ...