The algorithm also features automated charge determination for low mass accuracy data, precursor filtering (including intact charge-reduced peaks), and the ability to combine both positive and negative MS/MS spectra into a single search, and it is freely open to the public. The accuracy and ...
A reconfigurable computing platform includes a reconfigurable computing device, electro-optical transceiver, and first voltage converter disposed on a multilayer board. The electro-optical transceiver converts an optical signal at least one of to and from an electrical signal, and the electrical signal ...
OmicsARules is a tool for the analysis of multi-omics high-throughput data based on the use of association rules mining. OmicsARules supports to identify recurrent and associated patterns, and provides a new dimension for exploring single or multiple omics data across sequencing platforms or across...
Our database is primarily an electronic-structure database with query tools that allow searches of compounds with desired crystal and/or band structures. In addition, the database contains DFT simulated data with a variety of query capabilities. The database management system (DMS) is built on M...
We develop data structures and compression algorithms for HTS data. A processing stage maps short sequences to a reference genome or a large table of sequences. Then the integers representing the short sequence absolute or relative addresses, their length, and the substitutions they may contain are...
High-throughput measurement technologies produce data sets that have the potential to elucidate the biological impact of disease, drug treatment, and environmental agents on humans. The scientific community faces an ongoing challenge in the analysis of t
The source code for software implementation (in R and C/C++), simulation studies and real data processing are provided in https://github.com/ArtemisZhao/INTRIGUE. A Docker image that duplicates the complete computational environment for reproducing the reported results can be freely downloaded from ...
C library for high-throughput sequencing data formats - samtools/htslib
Large-scale simulations, such as climate modeling, high-energy physics simulation, and genome mapping generate more than hundreds of terabytes of data volume [1], [2]. Additionally, it still increases as the high resolution model is developing. As a consequence, analysis of scientific data is ...
Big data challenges and opportunities in high-throughput sequencing . Syst. Biomed. 1 , 29–34 (2013).Ward RM et al (2013) Big data challenges and opportunities in high-throughput sequencing. Syst Biomed 1(1):29-34Big data challenges and opportunities in high-throughput sequencing[J] . R ...