ꔷ study_id:GWASCatalog里研究的accession号,前四个字母是“GCST”,可以是向量类型 ꔷ association_id:GWAS catalog里的关联信息ID,是一个数字,可以是向量类型 ꔷ variant_id:GWASCatalog里的遗传变异信息,一般均为rsid,可以是向量类型 ꔷ efo_id:GWAS Catalog里性状的ID号,以“EFO”开头,可以是向量类型...
and the cases for the phenotype being analysed, i.e. oversampled cases from the other psychiatric disorders were not used. The final number of individuals used for the GWAS of each phenotype is presented in Supplementary Table1. The linear regression GWAS was performed using the bigsnpr package...
and the cases for the phenotype being analysed, i.e. oversampled cases from the other psychiatric disorders were not used. The final number of individuals used for the GWAS of each phenotype is presented in Supplementary Table1. The linear regression GWAS was performed using the bigsnpr package...
All summary statistics described here for total and LDL cholesterol in ~4,300 admixed UK Biobank individuals can be found athttps://github.com/eatkinson/Tractor_ms_resultsand have been uploaded to the GWAS catalog under accession numbersGCST90012868–GCST90012873(https://www.ebi.ac.uk/gwas/...
Recently, the eQTL Catalog has been made available by the EMBL-EBI (Kerimov et al., 2020). Problem 5 It is assumed that there is a viable surrogate phenotype in the IMPC for step eight, however there is a limited number of phenotypes available from the IMPC and there may not be one ...
(LDSD regression), https://github.com/bulik/ldsc; MetaXcan, https://github.com/hakyimlab/MetaXcan; Mouse Phenotype Ontology, http://www.informatics.jax.org/vocab/mp_ontology; NHGRI-EBI GWAS catalog, https://www.ebi.ac.uk/gwas/; picard, http://picard.sourceforge.net/; PLINK 1.90, ...
Despite this replicated colocalization, neither the unannotated gene AP003108.2 nor the GlobalAA lead eVariant, rs492751, has reported associations in the GWAS Catalog [35]. We further observed that rs492751 has highly variable allele frequencies between 1000 Genomes superpopulations (alternative allele...
GWAS catalog:Variants associated with the phenotype of interest. The variants are then annotated withmyvariant. Installation Dependencies VarGen needs the following: R(tested on version 3.6) An internet connection The following R libraries:(The number is the version tested during development) ...
Catalog website (https://www.ebi.ac.uk/gwas/). From the database inception to 05 August 2019, 56 asthma-related studies reported with significant or suggestive findings. As for these 56 studies, there were a number of 846 risk SNPs and 856 mapped genes documented in the GWAS Catalog ...
Summary statistics that support the findings of this study have been deposited in the NHGRI-EBI GWAS catalog with the accession codeGCST90011871. The individual level genotype data are not publicly available since they contain information that could compromise research participant privacy and consent...