ꔷ study_id:GWASCatalog里研究的accession号,前四个字母是“GCST”,可以是向量类型 ꔷ association_id:GWAS catalog里的关联信息ID,是一个数字,可以是向量类型 ꔷ variant_id:GWASCatalog里的遗传变异信息,一般均为rsid,可以是向量类型 ꔷ efo_id:GWAS Catalog里性状的ID号,以“EFO”开头,可以是向量类型...
The GWAS summary statistics data that support the findings of this study (for both multi-ancestry and European-only analyses) are publicly available at https://www.epigad.org/ and in the NHGRI-EBI GWAS Catalog at https://www.ebi.ac.uk/gwas/ (accession IDs: GCST90271608, GCST90271609, ...
All summary statistics described here for total and LDL cholesterol in ~4,300 admixed UK Biobank individuals can be found athttps://github.com/eatkinson/Tractor_ms_resultsand have been uploaded to the GWAS catalog under accession numbersGCST90012868–GCST90012873(https://www.ebi.ac.uk/gwas/...
GWAS catalog: Variants associated with the phenotype of interest. The variants are then annotated with myvariant. Installation Dependencies VarGen needs the following: R (tested on version 3.6) An internet connection The following R libraries: (The number is the version tested during development) Bio...
diseases and traits according to the GWAS Catalog by the US National Human Genome Research Institute (NHGRI) [7,8]. It should be noted that about 85% of potentially functional variants are expected to be located in non-coding regions, and a smaller number thereof is believed to act through...
(bush et al. 2016 ). we have retrieved the information from the catalog by setting the phenotype as "melanoma" and "skin cancer" and extracted the following data: 1) snps, snp accession number; 2) phewas phenotype, the associated disorder; 3) p -value, the p-value corresponding to the...
Summary statistics that support the findings of this study have been deposited in the NHGRI-EBI GWAS catalog with the accession codeGCST90011871. The individual level genotype data are not publicly available since they contain information that could compromise research participant privacy and consent...
association is most significant). Loci previously reported to associate with both ALT and AST are named in bold.SLC30A10, the main topic of this report, is labeled in red on both plots. Source data for this figure are available from NHGRI-EBI GWAS catalog accessionGCST90013663andGCST900...
Summary statistics for this study are available for download from GWAS Catalog (https://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90335001-GCST90336000/) under accession codes GCST90335162, GCST90335163, GCST90335164, GCST90335165, GCST90335166, GCST90335167, GCST90335168, GCST903...
In this work, we generated comprehensive regulatory maps in human adipose and hypothalamic neurons, which lack complete genomic annotations despite their prominence in disease etiology. We profiled these cells across several differentiation stages to catalog chromatin accessibility, expression patterns, and ...