The pan-genomics is a comparative genomics-based methodology that identifies the core and the dispensable genomes. As gene content and genome copy number can vary in different populations of a single species, the inventory of the variation at genomic level in different isolates is crucial to ...
G. Genome-wide association for itraconazole sensitivity in non-resistant clinical isolates of Aspergillus fumigatus. Front. Fung. Biol. 1, 617338 (2021). Article Google Scholar Barber, A. E. et al. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection...
A pangenome of 173 isolates of Parastagonospora nodorum, a necrotrophic fungal pathogen of wheat, showed widespread potential for RIP-like SNPs across the genome, balanced by negative selection against non-synonymous changes in protein-coding regions. Darcy A. B. Jones Kasia Rybak James K. Hane ...
Fungi R.T.Moore, 1980 Synonyms Fungi Bartling, 1830, Engler, 1888, Jahn & Jahn, 1949 Inophyta Haeckel, 1866 Nematophyta Haeckel, 1866 Eumycetes Eichler, 1886 Mycetes Haeckel, 1868, pro parte Fungaceae Saccardo, 1882 Mycophyta Schussnig, 1925 Eumycetae Smith, 1938, pro parte Eumycoph...
FungiDB is a panfungal genome database that collects gene information and functional data and provides search tools for 61 species of fungi and oomycetes... DO Inglis,MS Skrzypek,E Liaw,... - 《Eukaryotic Cell》 被引量: 23发表: 2014年 FungiDB: An Integrated Bioinformatic Resource for Fungi...
FungiDB ( http://FungiDB.org) is a functional genomic resource for pan-fungal genomes that was developed in partnership with the Eukaryotic Pathogen Bioinformatic resource center ( http://EuPathDB.org). FungiDB uses the same infrastructure and user interface as EuPathDB, which allows for sophisti...
2005). This approach should be revisited as an integrated tool as it allows adjustment to situations where more than one DNA barcode is needed, and for genome-wide studies through which diagnostic short sequences may subsequently be identified. Lack of resolution of the ITS and use of secondary...
Fungi are crucial components of modern ecosystems. They may have had an important role in the colonization of land by eukaryotes, and in the appearance and success of land plants and metazoans1–3. Nevertheless, fossils that can unambiguously be identifi
68. Single-copy BUSCO gene regions predicted in theR. melanophthalmareference genome were extracted; and duplicated genes and fragments less than 1 kb were removed. A supermatrix was assembled by concatenating every BUSCO single-copy gene using FASconCAT.pl69. Metagenomic reads were mapped to ...
A pan-fungal phylogenomic matrix with high taxon sampling and occupancy To assemble a phylogenomic data matrix, we sampled 1,707 publicly available genomes from NCBI (one representative genome per species; retrieved on January 30, 2020), representing every major lineage across fungi (1,679 taxa) ...