The pan-genomics is a comparative genomics-based methodology that identifies the core and the dispensable genomes. As gene content and genome copy number can vary in different populations of a single species, the inventory of the variation at genomic level in different isolates is crucial to ...
A pangenome of 173 isolates of Parastagonospora nodorum, a necrotrophic fungal pathogen of wheat, showed widespread potential for RIP-like SNPs across the genome, balanced by negative selection against non-synonymous changes in protein-coding regions. Darcy A. B. Jones Kasia Rybak James K. Hane ...
E. et al. Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection. Nat. Microbiol. 6, 1526–1536 (2021). Article CAS PubMed Google Scholar Smith, S. D., Pennell, M. W., Dunn, C. W. & Edwards, S. V. Phylogenetics is the new genetics (...
Fungi Bartling, 1830, Engler, 1888, Jahn & Jahn, 1949 Inophyta Haeckel, 1866 Nematophyta Haeckel, 1866 Eumycetes Eichler, 1886 Mycetes Haeckel, 1868, pro parte Fungaceae Saccardo, 1882 Mycophyta Schussnig, 1925 Eumycetae Smith, 1938, pro parte Eumycophyta Tippo, 1942 Eumycota Whittaker...
68. Single-copy BUSCO gene regions predicted in theR. melanophthalmareference genome were extracted; and duplicated genes and fragments less than 1 kb were removed. A supermatrix was assembled by concatenating every BUSCO single-copy gene using FASconCAT.pl69. Metagenomic reads were mapped to ...
Increasing knowledge on breeding systems in various groups of fungi through whole-genome sequencing efforts, as well as intensive species screenings, makes it possible to investigate the different hypotheses we outline in this paper. Multiallelic unifactoriality is predicted to be associated with a ...
FungiDB is a panfungal genome database that collects gene information and functional data and provides search tools for 61 species of fungi and oomycetes... DO Inglis,MS Skrzypek,E Liaw,... - 《Eukaryotic Cell》 被引量: 23发表: 2014年 FungiDB: An Integrated Bioinformatic Resource for Fungi...
Fungi are crucial components of modern ecosystems. They may have had an important role in the colonization of land by eukaryotes, and in the appearance and success of land plants and metazoans1–3. Nevertheless, fossils that can unambiguously be identifi
Pangenomic analysis.AWhole genome phylogenetic analysis ofP.pacificasedimentiandP.pacificagyrusconducted using concatenated single-copy marker genes determined by GET_HOMOLOGUES [36] which used the OrthoMCL algorithm. The tree was estimated using maximum likelihood analysis and 1,000 bootstraps in IQ-TR...
(n = 8,909) were similar to those found in annotated genome assemblies of other Ajellomycetaceae (n = 9,041 on average); however, relative to other Ajellomycetaceae,P.hystricisandH.griseushave a modest increase in gene content (n = 9,935 andn = 10,225, ...