Providing genome data for non-vertebrate species, with tools for the manipulation, analysis and visualisation of that data
Ensembl Bacteria [3], Protists [4], Fungi [5], Plants [6] and Metazoa [7] (collectively, 'Ensembl Genomes [8]') are five portals for genome-scale data, developed in close collaboration with scientific communities expert in the biology of individual species. Implemented using the Ensembl ...
Ensembl数据库的结构设计合理,内容丰富。它针对不同类型的物种建立了对应的数据库,如EnsemblMetazoa(动物)、EnsemblProtists(原生生物)、EnsemblPlants(植物)、EnsemblFungi(真菌)和EnsemblBacteria(细菌)等。这些数据库分别收录了相应物种的基因组信息,包括基因序列、转录本信息、变体数据等。用户可以根...
fungi21(真菌), plants,metazoa(后生动物,复细胞动物)andprotists(原生动物)launched by EMBL-EBI last year, every sequenced genome provides anotherjigsaw22(线锯,镂花锯)piece in cataloguing the genetic diversity of life.
Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. Many of the databases supporting the portal have been built in close collaboration with the scientific community, ...
Ensembl Plants is an integrating portal for genome-scale data from plant genomes. Produced in collaboration with Gramene, Ensembl Plants includes data from important crop and model genomes, including Arabidopsis, rice, and maize. Recent additions include soybean and two evolutionary outliers, the spike...
最后简单介绍一下Ensembl网站,以上分析用到的网站是Ensembl的主网站,里面主要收录的是脊索动物的数据,它还有其他5个子网站,分别是Ensembl Bacteria、Ensembl Fungi、Ensembl Plants、Ensembl Protists、Ensembl Metazoa。大家如果在主网站找不到自己想要下载同源基因的物种,可以在这些子网站寻找自己研究的物种,然后进行同源基因...
Here we introduce the EasyMirror and EasyImport pipelines to facilitate the setup and hosting of custom Ensembl genome browsers. EasyMirror (https://github.com/lepbase/easy-mirror) makes it possible to set up a mirror of any Ensembl or Ensembl Genomes (including Bacteria, Metazoa, Fungi, ...
Ensembl Genomes (http://www.ensemblgenomes.org) consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the genomes available in Ensembl. It currently contains data for over 300 species. Many of the databases that support Ensembl ...
Resources for metazoan genomes are available from the EnsemblMetazoa database; plant and fungal genomes can be found at the EnsemblPlants and EnsemblFungi databases, respectively; and the unicellular eukaryotic and prokaryotic genomes are available at the EnsemblProtists and EnsemblBacteria databases, ...