REST and FTP java utility library for the ENSEMBL API athttp://rest.ensembl.org/andhttp://www.ensembl.org/info/data/ftp/index.html javarestgenomicsftpensembl Updatedon Oct 17, 2021 Java HTCondor Meadow for Ensembl Hive dockerperlhtcondorehiveensemblship ...
Normally, the reference genome assembly used by Ensembl matches the one used in the current build of dbSNP. When this is the case, the variant mapping positions can be imported directly from dbSNP and are therefore in sync with the rest of the data in Ensembl. As the genome browser at UCS...
ftp://ftp.ensembl.org/pub/. Accessed 17 Mar 2016. htslib-based indexer. http://www.htslib.org/. Accessed 17 Mar 2016. Illumina’s Platinum Genomes. http://www.illumina.com/platinumgenomes/. Accessed 17 Mar 2016. Prebuilt Variant Effect Predictor datasets. ftp://ftp.ensembl.org/pub/...
Ensembl store gene files as GTF, allow attachment of GTF files to view against the genome and allow custom annotation with the VEP using GTF files. Wikipedia GVF File formats Genome Variation Format (GVF) is used to store variation data. It can be found on the Ensembl FTP site. GWAS catal...
For convenience, Ensembl data is also available in species-specific files on the FTP sitehttp://www.ensembl.org/info/data/ftp/index.html. This includes sequence data in FASTA format, annotation in EMBL, GENBANK and GTF format and SQL files for the databases. Resequencing data is provided for...
Ensembl store gene files as GTF, allow attachment of GTF files to view against the genome and allow custom annotation with the VEP using GTF files. Wikipedia GVF File formats Genome Variation Format (GVF) is used to store variation data. It can be found on the Ensembl FTP site. GWAS ...