FastTree2–ApproximatelyMaximum-LikelihoodTrees forLargeAlignments MorganN.Price1,2*,ParamvirS.Dehal1,2,AdamP.Arkin1,2,3 1PhysicalBiosciencesDivision,LawrenceBerkeleyNationalLab,Berkeley,California,UnitedStatesofAmerica,2VirtualInstituteofMicrobialStressandSurvival,Lawrence ...
FastTree infers approximately-maximum-likelihood phylogenetic trees from alignments of nucleotide or protein sequences. FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. See documentation and compilation instructions, or download executables for Li...
Although FastTree 2 is not quite as accurate as methods that use maximum-likelihood SPRs, most of the splits that disagree are poorly supported, and for large alignments, FastTree 2 is 100-1,000 times faster. FastTree 2 inferred a topology and likelihood-based local support values for 237,...
超过3000个基因组iqtree直接跑断 直接跑了iqtree core dump fasttree >>> core dump 1、gtdbkt一条龙抽单拷贝 gtdbtk classify_wf --genome_dir share_BC_ref --out_dir ./share_BC_ref_output/ --extension .fa --cpus 56 2、gtdbkt分步跑 Step1:identify#这步是找出里面的marker gene的 #‘-x’指...
多线程fasttree命令这个软件里面并没有指定线程的参数,在MacOS/Linux里面软件提供了一个 FastTreeMP 的命令,它能够自动检测电脑最大的线程数FastTreeMP -gamma -lg gtdbtk.bac120.user_msa.fasta > tested_tree.fa 更多探索会慢慢修改此篇文章,有兴趣的话,关注留意一下。你们的点赞查阅是我分享的动力 参考 GTDBTk...