FastTree can handle alignments with up to a million of sequences in a reasonable amount of time and memory. See documentation and compilation instructions, or download executables for Linux (double-precision or single-precision) or Windows (single-precision command-line executable) About FastTree 2:...
Although FastTree 2 is not quite as accurate as methods that use maximum-likelihood SPRs, most of the splits that disagree are poorly supported, and for large alignments, FastTree 2 is 100-1,000 times faster. FastTree 2 inferred a topology and likelihood-based local support values for 237,...
超过3000个基因组iqtree直接跑断 直接跑了iqtree core dump fasttree >>> core dump 1、gtdbkt一条龙抽单拷贝 gtdbtk classify_wf --genome_dir share_BC_ref --out_dir ./share_BC_ref_output/ --extension .fa --cpus 56 2、gtdbkt分步跑 Step1:identify#这步是找出里面的marker gene的 #‘-x’指...
fasttree_2.1.11-2.dsc 2.0 kB 4eb5d55c3db8c5b6aebb8dc31a3217d8 fasttree_2.1.11.orig.tar.xz 93.8 kB 44830517cc52f2406ba315a14f2ff10d fasttree_2.1.11-2.debian.tar.xz 33.3 kB 67fc001726234552d41a2ad15b83692dDebian Package Source Repository (VCS: Git) https://salsa.debian.org/med-team/...
多线程fasttree命令这个软件里面并没有指定线程的参数,在MacOS/Linux里面软件提供了一个 FastTreeMP 的命令,它能够自动检测电脑最大的线程数FastTreeMP -gamma -lg gtdbtk.bac120.user_msa.fasta > tested_tree.fa 更多探索会慢慢修改此篇文章,有兴趣的话,关注留意一下。你们的点赞查阅是我分享的动力 参考 GTDBTk...