都8102年了,还用fastq-dump,快换fasterq-dump吧 之前写过一篇文章Fastq-dump: 一个神奇的软件, 详细介绍了fastq-dump的用法。 虽然fastq-dump参数很多,而且一直被吐槽参数说明写的太差,但是如果真的要用起来其实也就是一行代码 fastq-dump --gzip --split-3 --defline-qual '+' --defline-seq '@$ac-$s...
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But, the command worked for an individual SRA file ($ fasterq-dump ./directory/SRA.sra -S -e 10 -O ./SRA-all --> it worked) Error message is like belowfasterq-dump.2.11.0 err: name not found while resolving query within virtual file system module - failed to resolve accession './...
Your second command "fasterq-dump ERR695638" does not use the accession you downloaded via prefetch. By specifying a bare accession the tool always goes out over the internet and fetches the data again - in other words - it ignores your prefetched data. The right way to specify a local co...
Hi All, I am trying to use fasterq-dump to extract fasta files for this accession SRR16235266 Anytime I use it fastq files are rather generated. Below is the command I use fasterq-dump --fasta 60 SRR16235266 Please advice.
I am trying to download files from project GEO series GSE132044. From what I can tell, most (if not all) of the associated runs are paired-end with multiple fastq files deposited, but I only get a single fastq file every single time. For...