These sequences can be found on NCBI databases and accessed via a web browser (GUI) or directly via NCBI API. While the GUI is user-friendly, it lacks certain functionalities. On the other extreme, the use of the API is flexible but requires coding knowledge. NSDPY is a python package ...
Only download sequences of the provided species NCBItaxonomyIDs. A comma-separated list of species taxids is also possible. For example: "52342,12325". (default: []) -t TAXIDS, --taxids TAXIDS 根据NCBIid进行下载 Only download sequences of the provided NCBI taxonomy IDs. A comma-separated...
and Geneious R10.2.3 or earlier, can no longer download sequences from NCBI Genomes and Nucleotide. Users on these versions will get the error "Download failed - Unexpected end of file null" when attempting to download from these databases. ...
Note: To see all available groups, see ncbi-genome-download --help, or simply use all to check all groups. Naming a more specific group will reduce the download size and the time needed to find the sequences to download. If you're on a reasonably fast connection, you might want to tr...
ncbi-genome-download bacteria,viral Note: To see all available groups, seencbi-genome-download --help, or simply useallto check all groups. Naming a more specific group will reduce the download size and the time needed to find the sequences to download. ...
FASTA is a DNA sequence format for specifying or representing DNA sequences. It does not contain sequence quality information. Reference:Wikipedia FASTA格式 (3) FASTQ file format FASTQ is extended FASTA file format with sequencing quality score (phred score). ...
DownloadLEAGeneSequencesfrom theNCBI XiaojingZhang * ,XingqinCao,WeiminPan # SchoolofLifeSciences,XinjiangNormalUniversity,Urumchi Email:313741033@qq, # 379483304@qq Received:Apr.11 th ,2014;revised:Apr.18 th ,2014;accepted:Apr.22 nd ,2014 ...
Batch download protein sequences from CMR (comprehensive microbial resource)NCBI 有时批量下载的protein sequence会有不一致时,可以从以下资源数据库下载(eg, eth195) http://cmr.jcvi.org/cgi-bin/CMR/shared/MakeFrontPages.cgi?page=batchdownload
Merge two or more large sequence files (fasta, fsa, fast, fastq, seq, gbk, etc). Freeware NCBI suite NCBI Blast Installer A tool that automatically downloads and installs the latest NCBI Blast+ edition in your computer. Freeware NCBI Blast DB Downloader A tool that automates the NCBI ...
NCBI BLAST DB Downloader is a a freeware biology software tool that automates the NCBI BLAST DB download process. NextGen SFF/FastQ Workbench is an efficient and easy to use FastQ/SFF file viewer, editor, filter and converter. Sequence Dereplicator is a tool that allows you to dereplicate ...