The microarray data of IER3 in the GSE16011 set were downloaded from the Gene Expression Omnibus (GEO) database (https://www.ncbi.nlm.nih.gov/geo/). Gliomas with age < 18 and incomplete clinical and pathological follow-up information were excluded, such as age, gender, isocitrate ...
Sign in to download hi-res image Fig. 4.Boxplots for the distribution of relative abundance for the 25 most abundant and prevalent genera in pasture and feed, farm environments, teat skin, teat and bulk tank milk inFalardeau et al. (2019). Sequences were downloaded from NCBI/SRA and pro...
The datasets analyzed during the current study are available in public databases such as TCGA (https://portal.gdc.cancer.gov/), GEO (https://www.ncbi.nlm.nih.gov/geo/) and ICGC(https://dcc.icgc.org/). The source code can be obtained from GitHub (https://github.com/liu-xiaohong/sup...
Single-cell sequence analysis and cell type identification After quality control and removal of the batch effect (Supplementary Fig. 1) between pretreatment (PD-1 antibody combined with chemotherapy, patient 08) and posttreatment (achieving pCR, patient 06) GSE207422 scRNA-seq data, 10,441 single...
Single-cell RNA sequence data from 6 samples were analyzed while studying the GSE188711 (including 19,872 CRC cells) dataset for CRC. The “Seurat” R package122was utilized to construct S4 objects, and then the “Harmony” R package123was used to integrate data from multiple samples. To en...
Dataset GSE148071's single-cell RNA sequencing profile, which includes 60,288 individual cells from 42 patients, was sourced from the Gene Expression Omnibus (GEO, https://www.ncbi.nlm.nih.gov/geo/). Additionally, RNA-seq expression information and clinical data for LUAD patients (https://po...
# -a --adapters 也是输入一个文件,文件的格式Name [Tab] Sequence,储存的是测序的adpater序列信息,如果不输入,目前版本的FastQC就按照通用引物来评估序列时候有adapter的残留 # -q --quiet 安静运行模式,一般不选这个选项的时候,程序会实时报告运行的状况。
Download: Download full-size image Fig. 1. Microbial community profiles of the phyla in C. migao rhizosphere and bulk soil, percent relative abundance (y-axis). (a) Upset Venn diagram of amplicon sequence variant (ASVs) in the rhizosphere and bulk soil of C. migao. (b) RO (year one ...
G. Breakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote species. PLoS ONE 7, e40861 (2012). Article CAS ADS Google Scholar Bhargava, A. & Fuentes, F. F. Mutational Dynamics of Microsatellites. Mol. Biotechnol. 44, ...
Quality check of bulk Illumina short-read sequencing. (a) Boxplot showing average sequence quality per base for LT-HSC (red), ST-HSC (green) and MPP (blue), 5 replicates per cell type. (b) Gene body coverage of all detected genes. (c) Frequency of counts mapped in various gene regio...