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Code Pull requests Actions Projects Security Insights Additional navigation options Files master DF.screenshots R man tests .Rbuildignore .gitignore DESCRIPTION DoubletFinder.Rproj NAMESPACE README.md Breadcrumbs DoubletFinder / Latest commit Chris McGinnis ...
DoubletFinder.Rproj NAMESPACE README.mdBreadcrumbs DoubletFinder / DF.screenshots/ Directory actions More options Failed to load latest commit information. Latest commit Cannot retrieve latest commit at this time. HistoryHistory This branch is 11 commits behind chris-mcginnis-ucsf/DoubletFinder:mast...
~~ Announcement (11/24/21) ~~ I'm now a postdoc at Stanford and my UCSF email will be decommissioned soon. I also only check my github repos about once per month, so please reach out directly at cmcginni@stanford[dot]edu if you run into any issues. DoubletFinder (code written by ...
Dear Chris and team, Sorry for asking you and your team again. Hope you do not mind. You said Doublet Finder should work with Seurat 5 now. I am using Seurat 5.0.1. I used the following scripts! #read data of data ! data<- Read10X(data.d...
## 载入需要的程辑包:DoubletFinder if(!require(DoubletFinder)) remotes::install_github('chris-mcginnis-ucsf/DoubletFinder') 数据读取 这里我们使用 pbmc3k 的数据集来做例子,完成整个分析过程,这里我们需要调用 Seurat 软件包来完成数据的处理工作。数据读入如下: library(DoubletFinder) library(tidyverse) ...
根据Poisson分布,单个液滴包含超过一个细胞(doublets或multiplets)的频率随着上机细胞的浓度而改变。通常如果上样细胞浓度较高,doublets/multiplets的频率也会增加。因此,单细胞实验中的doublets事件限制了实验时的细胞通量。 1.DoubletFinder概述 官网:https://github.com/ddiez/DoubletFinder ...
Hi, I was wondering if I can use DoubletFinder to detect the doublets on my BCR data? I have the read counts and wanted to know how I should remove the doublets. Thanks, SaraSign up for free to join this conversation on GitHub. Already have an account? Sign in to comment ...
官网地址:https://github.com/chris-mcginnis-ucsf/DoubletFinder DoubletFinder的原理是从现有的矩阵的细胞中根据我们预先定义好的细胞类型模拟一些双细胞出来(比如单核和T细胞的双细胞、B细胞和中性粒细胞的双细胞等等),将模拟出的双细胞和原有矩阵的细胞混合在一起,进行降维聚类,原则上人工模拟的doublets会与真实...
testthat::expect_length( pbmc_small_dubs$DF.doublet.contributors_0.5_0.01_5_2, 80 ) })0 comments on commit 0710f5a Please sign in to comment. Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information ...