Github全套代码文献复现之卵巢和子宫内膜肿瘤(二)|| 作者不进行 UMI count 回归的原因 今天继续来学习他的代码,代码部分接上面的稿子,做完了数据预处理,保存的对象为saveRDS(rna,"./rna_predoublet_PassedPC1Checks.rds")。 今天的学习内容: 今天主要学习作者 对双细胞进行过滤,这里主要使用了两款软件 DoubletDec...
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Breadcrumbs DoubletFinder / DoubletFinder.Rproj Latest commit Chris McGinnis Add files via upload ee5a7ec· Nov 30, 2018 HistoryHistory File metadata and controls Code Blame 20 lines (15 loc) · 356 Bytes Raw Version: 1.0 RestoreWorkspace: Default SaveWorkspace: Default AlwaysSaveHistory: De...
testthat::expect_length( pbmc_small_dubs$DF.doublet.contributors_0.5_0.01_5_2, 80 ) })0 comments on commit 0710f5a Please sign in to comment. Footer © 2024 GitHub, Inc. Footer navigation Terms Privacy Security Status Docs Contact Manage cookies Do not share my personal information ...
DoubletFinder.Rproj NAMESPACE README.mdBreadcrumbs DoubletFinder / DF.screenshots/ Directory actions More options Failed to load latest commit information. Latest commit Cannot retrieve latest commit at this time. HistoryHistory This branch is 11 commits behind chris-mcginnis-ucsf/DoubletFinder:mast...
I also only check my github repos about once per month, so please reach out directly at cmcginni@stanford[dot]edu if you run into any issues. NOTE: I (Chris McGinnis) do not check the issues very frequently (about once a month) so if you need help, feel free to reach out to ...
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I'm trying to run DoubletFinder for the first time, and I'm having an issue when trying to run paramsweep. When running sweep.res.list<- paramSweep(Seurat_Object, PCs = 1:50, sct = FALSE) the results are sweep.res.list <- paramSweep(Seur...
Hi, I was wondering if I can use DoubletFinder to detect the doublets on my BCR data? I have the read counts and wanted to know how I should remove the doublets. Thanks, SaraSign up for free to join this conversation on GitHub. Already have an account? Sign in to comment ...
remotes::install_github('chris-mcginnis-ucsf/DoubletFinder')DependenciesDoubletFinder requires the following R packages:Seurat (>= 2.0) Matrix (1.2.14) fields (9.6) KernSmooth (2.23-15) ROCR (1.0-7) parallel (3.5.1) NOTE: These package versions were used in the bioRxiv paper, but other...