@@ -133,7 +142,7 @@ doubletFinder_v3 <- function(seu, PCs, pN = 0.25, pK, nExp, reuse.pANN = FALSE, if(!is.null(annotations)){ colnames(neighbor_types) = levels(doublet_types1) for(ct in levels(doublet_types1)){ seu@meta.data[, paste("DF.doublet.contributors",pN,pK,nEx...
Fix chris-mcginnis-ucsf#133 Browse files master (chris-mcginnis-ucsf/DoubletFinder#158) ekernf01 committed Mar 28, 2023 1 parent 6ccc36d commit 11d1882 Showing 1 changed file with 0 additions and 1 deletion. Whitespace Ignore whitespace Split Unified 1 change: 0 additions & 1 delet...
针对您遇到的 remotes::install_github('chris-mcginnis-ucsf/doubletfinder') 安装错误问题,以下是一些可能的解决步骤和检查点,帮助您诊断并解决问题: 1. 检查网络连接 首先,确保您的设备已连接到互联网,并且网络连接是稳定的。可以尝试访问其他网站或在线资源来验证网络连接。 2. 确认R语言和remotes包安装情况 检...
代码语言:javascript 复制 https://api.github.com/repos/cansysbio/ConsensusTME/tarball/HEADhttps://api.github.com/repos/chris-mcginnis-ucsf/DoubletFinder/tarball/HEADhttps://api.github.com/repos/GfellerLab/EPIC/tarball/HEADhttps://api.github.com/repos/ebecht/MCPcounter/tarball/masterhttps://api....
DoubletFinder is an R package that predicts doublets in single-cell RNA sequencing data. DoubletFinder is implemented to interface with Seurat >= 2.0 (https://satijalab.org/seurat/) DoubletFinder was published by Cell Systems in April, 2019:https://www.cell.com/cell-systems/fulltext/S2405...
Here is 1 public repository matching this topic... Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA pathwaygseawgcnamofadeseq2-analysisdoubletfindergene-expression-unitdea-protein ...
🌱 I’m currently learning Python. I'm also a dentist. 💞️ I’m looking to collaborate on the Single Cell analysis. 📫 How to reach mezb.9527@163.com Popular repositoriesLoading DoubletFinder_204_fixDoubletFinder_204_fixPublic ...
DoubletFinder.Rproj NAMESPACE README.mdBreadcrumbs DoubletFinder / DF.screenshots/ Directory actions More options Failed to load latest commit information. Latest commit Cannot retrieve latest commit at this time. HistoryHistory This branch is 11 commits behind chris-mcginnis-ucsf/DoubletFinder:mast...
use this code: remotes::install_github('lzmcboy/DoubletFinder_204_fix') After running remotes::install_github('lzmcboy/DoubletFinder_204_fix'), I still get an error: Error in seu@assays$RNA$counts : $ operator not defined for this S4 class. z-bluesky commented Mar 14, 2024 • ...
Hi, I was wondering if I can use DoubletFinder to detect the doublets on my BCR data? I have the read counts and wanted to know how I should remove the doublets. Thanks, SaraSign up for free to join this conversation on GitHub. Already have an account? Sign in to comment ...