Fix chris-mcginnis-ucsf#133 Browse files master (chris-mcginnis-ucsf/DoubletFinder#158) ekernf01 committed Mar 28, 2023 1 parent 6ccc36d commit 11d1882 Showing 1 changed file with 0 additions and 1 deletion. Whitespace Ignore whitespace Split Unified 1 change: 0 additions & 1 delet...
@@ -133,7 +142,7 @@ doubletFinder_v3 <- function(seu, PCs, pN = 0.25, pK, nExp, reuse.pANN = FALSE, if(!is.null(annotations)){ colnames(neighbor_types) = levels(doublet_types1) for(ct in levels(doublet_types1)){ seu@meta.data[, paste("DF.doublet.contributors",pN,pK,nEx...
DoubletFinder算法预测双细胞 这个软件于2019年4月24发表在 Cell Systems(2021年影响因子 11.091),文献标题为:《DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors》。 双包体阻碍了差异基因表达分析,因为双包体在基因表达空间中单独聚集,与它们所源于的细胞类型共...
DoubletFinder算法预测双细胞 这个软件于2019年4月24发表在 Cell Systems(2021年影响因子 11.091),文献标题为:《DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors》。 双包体阻碍了差异基因表达分析,因为双包体在基因表达空间中单独聚集,与它们所源于的细胞类型共...
针对您遇到的 remotes::install_github('chris-mcginnis-ucsf/doubletfinder') 安装错误问题,以下是一些可能的解决步骤和检查点,帮助您诊断并解决问题: 1. 检查网络连接 首先,确保您的设备已连接到互联网,并且网络连接是稳定的。可以尝试访问其他网站或在线资源来验证网络连接。 2. 确认R语言和remotes包安装情况 检...
代码运行次数:0 复制 Cloud Studio代码运行 https://api.github.com/repos/cansysbio/ConsensusTME/tarball/HEADhttps://api.github.com/repos/chris-mcginnis-ucsf/DoubletFinder/tarball/HEADhttps://api.github.com/repos/GfellerLab/EPIC/tarball/HEADhttps://api.github.com/repos/ebecht/MCPcounter/tarball/...
DoubletFinder算法预测双细胞 这个软件于2019年4月24发表在 Cell Systems(2021年影响因子 11.091),文献标题为:《DoubletFinder: Doublet Detection in Single-Cell RNA Sequencing Data Using Artificial Nearest Neighbors》。 双包体阻碍了差异基因表达分析,因为双包体在基因表达空间中单独聚集,与它们所源于的细胞类型共...
Here is 1 public repository matching this topic... Differential Expression Analysis of protein, Gene set enrichment analysis, Multi-omic factor analysis, Pathway analysis, WGCNA pathwaygseawgcnamofadeseq2-analysisdoubletfindergene-expression-unitdea-protein ...
DoubletFinder takes the following arguments:seu ~ This is a fully-processed Seurat object (i.e., after NormalizeData, FindVariableGenes, ScaleData, RunPCA, and RunTSNE have all been run).PCs ~ The number of statistically-significant principal components, specified as a range (e.g., PCs =...
I'm trying to run DoubletFinder for the first time, and I'm having an issue when trying to run paramsweep. When running sweep.res.list<- paramSweep(Seurat_Object, PCs = 1:50, sct = FALSE) the results are sweep.res.list <- paramSweep(Seurat_Object, PCs = 1:50, sct = FALSE) ...