Am working in RStudio with Seurat v5, get to the step to remove doublets, installation of DoubletFinder has issue, please help remotes::install_github('chris-mcginnis-ucsf/DoubletFinder') Using github PAT from
针对您遇到的 remotes::install_github('chris-mcginnis-ucsf/doubletfinder') 安装错误问题,以下是一些可能的解决步骤和检查点,帮助您诊断并解决问题: 1. 检查网络连接 首先,确保您的设备已连接到互联网,并且网络连接是稳定的。可以尝试访问其他网站或在线资源来验证网络连接。 2. 确认R语言和remotes包安装情况 检...
cleitimentioned this issueDec 8, 2023 Dragonmasterx87added a commit to Dragonmasterx87/DoubletFinder that referenced this issueOct 7, 2024 Update doubletFinder.R 50579d8 Owner chris-mcginnis-ucsfcommentedFeb 3, 2025
https://api.github.com/repos/satijalab/seurat-data/tarball/HEAD 最后全部的列表如下所示: https://api.github.com/repos/cansysbio/ConsensusTME/tarball/HEAD https://api.github.com/repos/chris-mcginnis-ucsf/DoubletFinder/tarball/HEAD https://api.github.com/repos/GfellerLab/EPIC/tarball/HEAD https...
https://api.github.com/repos/cansysbio/ConsensusTME/tarball/HEAD https://api.github.com/repos/chris-mcginnis-ucsf/DoubletFinder/tarball/HEAD https://api.github.com/repos/GfellerLab/EPIC/tarball/HEAD https://api.github.com/repos/ebecht/MCPcounter/tarball/master ...
github.com/repos/chris-mcginnis-ucsf/DoubletFinder/tarball/HEAD https://api.github.com/repos/GfellerLab/EPIC/tarball/HEAD https://api.github.com/repos/ebecht/MCPcounter/tarball/master https://api.github.com/repos/aertslab/SCENIC/tarball/HEAD https://api.github.com/repos/AntonioDeFalco/SC...
remotes::install_github('chris-mcginnis-ucsf/DoubletFinder', force = TRUE) Dependencies DoubletFinder requires the following R packages: Seurat (>= 2.0) Matrix (1.2.14) fields (9.6) KernSmooth (2.23-15) ROCR (1.0-7) parallel (3.5.1) ...
Hi, I am trying to install this package using the following code: devtools::install_github('chris-mcginnis-ucsf/DoubletFinder') however, I get an error message like this: Downloading GitHub repo chris-mcginnis-ucsf/DoubletFinder@master E...
Hi, I was wondering if I can use DoubletFinder to detect the doublets on my BCR data? I have the read counts and wanted to know how I should remove the doublets. Thanks, SaraSign up for free to join this conversation on GitHub. Already have an account? Sign in to comment ...
Dear Chris and team, Sorry for asking you and your team again. Hope you do not mind. You said Doublet Finder should work with Seurat 5 now. I am using Seurat 5.0.1. I used the following scripts! #read data of data ! data<- Read10X(data.d...