complicated data manipulation.Lasergene Genomicsmakes it quick and easy to set up your ChIP-Seq analysis project, by offering an easy-to-use wizard that guides you through project setup in minutes. The software also includes several different customizable options for variant detection...
We present a set of 20 ChIP-seq analysis software modules implemented in the Kepler workflow system; most (18/20) were also implemented as standalone, fully functional R scripts. The set consists of four full turnkey pipelines and 16 component modules. The turnkey pipelines in Kepler allow ...
之前看到有一些大佬在分析数据时使用了CEAS软件,看起来很好用:CEAS(ChIP-Enrichment Analysis Suite)是一种用于分析和解释 ChIP-seq 数据的工具套件,旨在识别和量化蛋白质-DNA 结合的富集区域及其生物学意义。CEAS 专注于 ChIP-seq 数据的后续分析和解读,包括在基因组中的富集模式、功能注释以及与其他数据集的比较。
In addition to implementing previously published ChIP–microarray (ChIP-chip) analysis methods, the software contains statistical methods designed specifically for ChlP sequencing (ChIP-seq) data obtained by coupling ChIP with massively parallel sequencing. The modular design of CisGenome enables it to ...
In addition to implementing previously published ChIP–microarray (ChIP-chip) analysis methods, the software contains statistical methods designed specifically for ChlP sequencing (ChIP-seq) data obtained by coupling ChIP with massively parallel sequencing. The modular design of CisGenome enables it to ...
6.Pathway analysis 7.Data visualization 1.Alignment base calling——Off-Line Basecaller software (OLB V1.8.0). Solexa CHASTITY quality filter【质量控制】 http://www.genomics.agilent.com/article.jsp?pageId=2213 BOWTIE software (V2.1.0) ...
6.Pathway analysis 7.Data visualization 1.Alignment base calling——Off-Line Basecaller software (OLB V1.8.0). Solexa CHASTITY quality filter【质量控制】 http://www.genomics.agilent.com/article.jsp?pageId=2213 BOWTIE software (V2.1.0) ...
ChIP-seq analysis notes from Ming Tang. Contribute to biobug16/ChIP-seq-analysis development by creating an account on GitHub.
HOMER is a software for motif discovery and ChIP-Seq analysis HOMER软件使用Perl和C++编写,可在UNIX系统流畅运行 conda install homer ~/miniconda3/bin/conda install -c bioconda homer #利用conda安装 homer Proceed ([y]/n)? #询问是否安装 y
Motif analysis(de novo and known), was performed using the* HOMER software and Genomatix. * *Peak overlaps *were processed with HOMER and Galaxy (Giardine et al., 2005). *Peak comparisons *between replicates were processed with EdgeR statistical package in R ...