cellranger-arc mkref --config=mRatBN7.config --nthreads=10 --memgb=50 2. 报错 报错一: mkref has FAILED Error building referencepackageErrorwhileparsing GTF file/storagenew/YZY_new/Single-nucleus-RNA+ATAC/Reference_for_Cellranger_arc/Dmel/dmel-all-r6.37.gtf Supplied GTFisinvalid.This row[...
cellranger-arc需要多组学数据,也就是同一批次的样本,一部分用于单细胞转录组建库,一部分用于单细胞ATAC建库。 cellranger-arc mkfastq 从原始bcl文件生成fastq文件: cellranger-arc mkfastq--id=tiny-bcl-atac \--run=/home/yanyt/02.data/10.cellranger_arc_test/01.example_data/01.database/cellranger-arc...
cellrangerarc/count/main.nf and cellrangerarc/mkref/main.nf * Removing files that I accidently added * Bugfix for cellrangerarc/mkgtf/main.nf * Rerun * Changes to tests/modules/nf-core/cellrangerarc/mkref/main.nf * Bugfix for python test data and cellrangerarc/count/main.nf * Iditot...
Download or create a cellranger-arc-compatible reference Reference packages for human (GRCh38) and mouse (mm10) compatible with Cell Ranger ARC are available fordownload. You can alsocreate a reference packageusingcellranger-arc mkrefstarting with a genome assembly FASTA file, a GTF file of gen...