cellranger-arc需要多组学数据,也就是同一批次的样本,一部分用于单细胞转录组建库,一部分用于单细胞ATAC建库。 cellranger-arc mkfastq 从原始bcl文件生成fastq文件: cellranger-arc mkfastq--id=tiny-bcl-atac \--run=/home/yanyt/02.data/10.cellranger_arc_test/01.example_data/01.database/cellranger-arc...
Runcellranger-arc mkfastqon the Illumina BCL output folder for each ATAC (GEX resp.) flow cell to generate ATAC (GEX resp.) FASTQ data. Note that a separate run ofmkfastqis required for each ATAC and each GEX flow cell. Run a separate instance ofcellranger-arc countfor eachGEM welltha...
40 changes: 40 additions & 0 deletions 40 modules/nf-core/cellrangerarc/mkfastq/Dockerfile @@ -0,0 +1,40 @@ # Dockerfile to create container with Cell Ranger Arc v2.0.2 and bcl2fastq v2.20.0 # Push to quay.io/nf-core/cellranger-arc-mkfastq:<VER> FROM continuumio/miniconda3:...