ARC-v1for analyzing the Gene Expression portion of Multiome data. If Cell Ranger auto-detectsARC-v1chemistry, an error is triggered. 3' Cell Multiplexing only These[gene-expression]options only apply to 3' Cell Multiplexing data analysis. ...
If you are aggregating libraries generated by different chemistry versions (v2 vs. v1.1) of the Single Cell ATAC reagents (not to be confused with the Cell Ranger ATAC pipeline version), you might observe systematic differences in chromatin accessibility profiles between libraries. Thecellranger-atac...
SC3Pv1for Single Cell 3′ v1, ARC-v1for analyzing the Gene Expression portion of Multiome data. Note, when the pipeline auto-detectsARC-v1chemistry, an error is triggered. NextGEM chemistries are 3'v1, 3'v2, 3'v3, and 5'v1, 5'v2; GEM-X chemistries are 3'v4 and 5'v3. ...
ARC-v1for analyzing the Gene Expression portion of Multiome data. If Cell Ranger auto-detectsARC-v1chemistry, an error is triggered. These[gene-expression]options only apply to 3' Cell Multiplexing data analysis. FieldDescription min-assignment-confidenceOptional. The minimum estimated likelihood to...
SC3Pv1for Single Cell 3′ v1, ARC-v1for analyzing the Gene Expression portion of Multiome data. Note, when the pipeline auto-detectsARC-v1chemistry, an error is triggered. NextGEM chemistries are 3'v1, 3'v2, 3'v3, and 5'v1, 5'v2; GEM-X chemistries are 3'v4 and 5'v3. ...
SC3Pv1for Single Cell 3′ v1, ARC-v1for analyzing the Gene Expression portion of Multiome data. Note, when the pipeline auto-detectsARC-v1chemistry, an error is triggered. NextGEM chemistries are 3'v1, 3'v2, 3'v3, and 5'v1, 5'v2; GEM-X chemistries are 3'v4 and 5'v3. ...