(base) [bio-wenzl@login04 ~]$ export PATH=/work/bio-wenzl/cellranger-7.1.0/:$PATH 再次输入cellranger,既可以看到可以正常运行了: (base) [bio-wenzl@login04 ~]$ cellranger cellranger cellranger-7.1.0 Process 10x Genomics Gene Expression, Feature Barcode, and Immune Profiling data USAGE: ...
Systems genomics aims to integrate genomic variation, copy number and structural variation with high-throughput gene expression, metabolomics and proteomic data to explore the genetic architecture of complex traits and multi-factorial diseases. For characterizing the SH-SY5Y cell line we integrated informat...
Overall, our data suggest that gene expression changes arising inin vitroculture affect multiple functions, processes, and pathways that are also affected in lymphomas. In turn, most if not all functions, processes, and pathways affected in B-cell lymphomas are altered in at least one of the l...
CISH expression was associated with Afatinib efficacy in DepMap LUAD cell-lines with EGFR mutations in (n) PRISM secondary screen (n = 8) and (o) CTRP database (n = 12), the regression line is blue, and the shading indicates the 95% CI. p The difference in OS between high...
Logical_Expression 有效的 MDX 逻辑表达式。 整数 有效的整数值。 Calculation_Name 一个提供单元计算属性名称的有效字符串。 Scalar_Expression 有效的 MDX 标量表达式。 备注 通过使用计算单元,客户端应用程序就可以指定一组特定单元的汇总值,而不必像在自定义汇总公式或计算成员中一样指定所有单元的汇总值。 例如,...
expression overall in RCC versus in normal tissues as well as in the major subtypes of RCC in different stages versus in normal tissues. The data showed that MCL-1 expression in chRCC is significantly decreased (Fig.5AB), while there is no significant difference for MCL-1 expression in ...
the red line represents line the high-risk score group, while the blue line represents the low-risk score group; G: Expression of the 9 prognostic model genes in the GSE25055 cohort between high- and low-risk group; H: Time-dependent receiver operating characteristic (ROC) curve of the pro...
Relative gene expression was calculated by mean of relative quantification (2-ΔΔCt) as previously described [60]. The specific real-time PCR primers for each gene were listed in Table S2 (Additional file 5: Table S2). MiR-188 stable cell line Plasmid carrying GFP and miR-188 hairpin ...
Our scRNA-seq data revealed widespread intra-tumoral heterogeneity in oncogenic alterations that are expressed in cancer cells (Figure 2) by demonstrating expression of not only the putative oncogenic driver but also additional oncogenic mutations (Figure 6, #1). This provides a potential explanation ...
Public healthy control data The lung scRNA-seq data from healthy controls were acquired from the Gene Expression Omnibus (GEO) database with the series number GSE122960, which contained the data of lung tissues from eight lung transplant donors generated using 3’ V2 chemistry kit on Chromium sin...