buildOptions= Bowtie2BuildOptions(Name,Value)setspropertiesusing one or more name-value pairs. Enclose each property name in quotes. For example,buildOptions = Bowtie2BuildOptions('ForceLargeIndex',true)specifies to force the creation of a large index even if the reference is less than 4 billi...
bowtie2-build的使用 1.build index database use bowtie2 bowtie2-build -f genome.fasta genome -f 为参考基因组genome.fasta Genome为文件索引
bowtie2_2.3.4.1-1_amd64 NAME bowtie2-build-l - building a colorspace index for bowtie2 SYNOPSIS bowtie2-build-l[options]*<reference_in><bt2_index_base> DESCRIPTION Bowtie 2 version 2.3.4.1 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu.edu/~langmea) reference_in comma-separate...
bowtie2-build Genome.fasta index genome.fasta :自己本身下载的fa文件 index：自己为之后建立的索引起的名字 回车 建库需要一段时间 之后会生成六个文件即可
Converting suffix-array elements to index image Allocating ftab, absorbFtab Entering Ebwt loop Getting block 1 of 8 Reserving size (1114) for bucket 1 Calculating Z arrays for bucket 1 Entering block accumulator loop for bucket 1: bucket 1: 10% ...
I'm not actually getting an error message, but I think its stopping before it actually finishing the index (see below for the output). This is on version 2.3.4.1, I used bioconda to install. INFO: Command: bowtie2-build-s --wrapper basic-0 -f Humann2Test/A1HF_humann2_temp/A1HF_...