In this study, bacteria were isolated from infected breast milk samples and whole-genome sequencing was performed on eleven isolates to accurately identify the bacteria and assess their antibiotic resistance profiles. Using Galaxy tools and the ResFinder database, we identified Bacillus paraanthracis , ...
The taxonomic assignment of each query genome was determined by the taxonomic information of all the NCBI-available prokaryotic genomes. The tetra-base signature profiles of all the genomes and each query genome were acquired. A Pearson correlation test was performed between each query genome and all...
The taxonomic distribution of these OTUs highlights the inclusion of many unknown taxa, although as a whole, the database is dominated by Proteobacteria (Fig. 2b). Protologger is entirely open source, hence the code and databases can be accessed via the GitHub repository (github.com/ thh32/...
The group used whole-genome sequencing of edited S. aureus RN4220 strains to study the off-target effect and reported no off-targeting at any of the potential off-target sites. 3.4. Pseudomonas Pseudomonas belongs to the genus of gram-negative bacteria with 144 different species, largest among...
For the Enterobacteriales, positional weight matrices were either built using the Genome Explorer and SignalX programs based on TFBSes in RegulonDB [71] or obtained from the RegPrecise database [72]. If the TFBS weight decreased by more than 1 (in the SD units), we counted it as TFBS ...
The results presented here provide valuable preliminary data on the putative host-associated bacterial species of P. purpurea. 展开 关键词: Metagenomics Microbial communities Rhodophyta Whole genome shotgun sequencing Pan-genome MICROBIAL DIVERSITY BROWN ALGA ENVIRONMENT IDENTIFICATION MORPHOGENESIS COMMUNITIES ...
genome. Together, the genome size, GC content, and GC skew for the “Common BE genomes” showed trends similar to (were not strongly deviated from) those for the entire data set of completed prokaryotic genomes analyzed obtained from the NCBI database. On the other hand, the strength of ...
Intratumoral and intracellular microbes may also regulate the metastatic cascade. Whole genome sequencing revealed a similarity of 99.9% betweenF. nucleatumisolates from primary CRC and liver metastasis, indicating likely bacterial migratory characteristics between these tumor sites49. Microbial regulation of ...
Here we provide an extensive, genome-sequenced culture collection representing approximately two thirds of bacterial strains detected in the sampled female bladders during both health and disease. Direct cultivation paired with whole-genome sequencing provides the ability to move beyond broad phylogenetic ...
Scarselli M, Storni E, Zuo P, Broeker M, Hundt E, Knapp B, Blair E, Mason T, Tettelin H, Hood DW, Jeffries AC, Saunders NJ, Granoff DM, Venter JC, Moxon ER, Grandi G, Rappuoli R: Identification of vaccine candidates against serogroup B meningococcus by whole-genome sequencing. ...