A 5 method for full genome sequencing of all four serotypes of the dengue virus. J 6 Virol Methods 2010;169:202-6.Christenbury JG, Aw PP, Ong SH, Schreiber MJ, Chow A, Gubler DJ, et al. A method for full genome sequencing of all four sero- types of the dengue virus. J Virol ...
The rapid accumulation of the whole genome sequencing (WGS) and the whole exome sequencing (WES) data has led to the discovery of a tremendous number of genetic variations, both pathogenic and non-pathogenic. To aid the assessment and understanding of these variations, population databases such a...
Methods Data processing Data acquisition cfRNA: For samples from Ibarra et al. (PRJNA517339), Toden et al. (PRJNA574438) and Chalasani et al. (PRJNA701722), raw sequencing data were obtained from the Sequence Read Archive with the respective accession numbers. For samples from Munchel et al...
Single-cell RNA-sequencing (scRNA-seq) is a powerful technique that provides high-resolution expression profiling of individual cells. It significantly advances our understanding of cellular diversity and function. Despite its potential, the analysis of scRNA-seq data poses considerable challenges related ...
and a population ofPdgfrα+fibroblasts in the mouse trachea induced differentiation of basal cells through the production of IL626. In the distal lung,Axin2+Pdgfrα+fibroblasts support AT2 cells through Il6, Bmp, and Fgf signaling modulation27. Using single-cell RNA sequencing (scRNA-seq), Tsuk...
To aid our interpretation of variable LB1 occupancy across the genome, we implemented hidden Markov models (HMMs) in each cell type to identify regions of LB1 enrichment (e.g., LADs) from LB1 ChIP-seq datasets (see “Methods”). We chose an HMM approach over broad peak callers like Enric...
Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and dietar... Mitochondrial genome sequencing of a vermivorous cone snail Conus quercinus supports the correlative analysis between phylogenetic relationships and ...
# additionalmcols():taxonomyid,genome,description,coordinate_1_based,maintainer,# rdatadateadded,preparerclass,tags,rdatapath,sourceurl,sourcetype # retrieve recordswith,e.g.,'object[["EH1661"]]'titleEH1661|Whole Genome Bisulfit Sequencing Datafor47samplesEH1662|Whole Genome Bisulfit Sequencing Data...
of cells2,3,4,5. Here we describe a human methylome atlas, based on deep whole-genome bisulfite sequencing, allowing fragment-level analysis across thousands of unique markers for 39 cell types sorted from 205 healthy tissue samples. Replicates of the same cell type are more than 99.5% ...
et al. A comparison of automatic cell identification methods for single-cell RNA sequencing data. Genome Biol. 20, 194 (2019). Article PubMed PubMed Central CAS Google Scholar Lopez, R., Regier, J., Cole, M. B., Jordan, M. I. & Yosef, N. Deep generative modeling for single-cell...