This article will describe some of the most relevant MBDBs in the microbiology field. The fundamental concepts required to understand the basic principles of each kind of MBDB, the internet servers, and their associated analysis software is discussed. Practical ideas of how to perform database ...
Human sample analysis TCGA-COAD gene expression data and clinical information were obtained using GDCRNATools (access date: Sep 27, 2023), which facilitated the organization and integrative analysis of RNA expression data in the Genomic Data Commons (GDC) Data Portal (Liu et al. 2023; Nicolau-...
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We also use optional cookies for advertising, personalisation of content, usage analysis, and social media. By accepting optional cookies, you consent to the processing of your personal data - including transfers to third parties. Some third parties are outside of the European Economic Area, with...
We also use optional cookies for advertising, personalisation of content, usage analysis, and social media. By accepting optional cookies, you consent to the processing of your personal data - including transfers to third parties. Some third parties are outside of the European Economic Area, with...
Bioinformatic analysis of chromatin organization and biased expression of duplicated genes between two poplars with a common whole-genome duplication. Hortic Res. 2021;8(1):62. 38. Feschotte C, Jiang N, Wessler SR. Plant transposable elements: where genetics meets genomics. Nat Rev Genet. 2002...
An overview of the most prevalent existing XML formats for sequence based bioinformatical data (which was the initial focus of our work) and a short evaluation for determining their general suitability as data formats in workflow scenarios is given in table 1. As can be seen, most current form...
On the left is the distinction between normal tissue (left half in red) and MS lesion (right half in black), and on the right the individual tissue areas are shown in different colors, such as the edge (red) and center (purple) of the lesion, based on bioinformatic analysis. Credit: ...
K. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 26, 139–140 (2010) CAS PubMed Google Scholar Benjamini, Y. & Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. R. ...
9×10–5 3×10–4 2×10–5 8×10–6 3×10–3 8×10–6 P value comparing proportion of GWAS SNPs in enhancer regions between adult renal and other tissue types Poised promoter Active promoter (strong or weak) Enhancer (strong or weak) Figure 3 | Bioinformatic analysis of eGFR-...