Example. A few popular databases are GenBank from NCBI (National Center for Biotechnology Information), SwissProt from the Swiss Institute of Bioinformatics and PIR from the Protein Information Resource. Table of Contents Types of Biological Databases 1. Primary databases 2. Secondary databases Importanc...
Choudhuri, S. (2014). Data, Databases, Data Format, Database Search, Data Retrieval Systems, and Genome Browsers. Bioinformatics for Beginners, 77–131. doi:10.1016/b978-0-12-410471-6.00005-0 https://www.ncbi.nlm.nih.gov/books/NBK21088/ Sanjeev, A., Mattaparthi, V. S. K., & Kaushi...
ACTINN: Automated Identification of Cell Types in Single Cell RNA Sequencing. Bioinformatics https://doi.org/10.1093/bioinformatics/btz592 (2019). Hou, R., Denisenko, E. & Forrest, A. R. R. scMatch: a single-cell gene expression profile annotation tool using reference datasets. Bioinformatics...
Identifying pathogenic variants from the vast majority of nucleotide variation remains a challenge. We present a method named Multimodal Annotation Generated Pathogenic Impact Evaluator (MAGPIE) that predicts the pathogenicity of multi-type variants. MAG
Bioinformatics 27, 2288–2295 (2011). Article CAS PubMed PubMed Central Google Scholar Géron, A., Werner, J., Wattiez, R., Lebaron, P. & Mattallana-Surget, S. Deciphering the functioning of microbial communities: shedding light on the critical steps in metaproteomics. Front. Microbiol....
We aimed to conduct a comprehensive analysis of THRAP3 and validate its expression levels in lung cancer. Methods: A pan-cancer analysis was conducted to study the correlation of THRAP3 expression with clinical outcome and the tumor microenvironment based on the available bioinform...
The analysis of over-represented functional classes in a list of genes is one of the most essential bioinformatics research topics. Typical examples of such lists are the differentially expressed genes from transcriptional analysis which need to be linked to functional information represented in the Gen...
Open Energy System Databases - Employ open data methods to collect, clean, and republish energy-related datasets for open use. PyPSA - A free software toolbox for simulating and optimizing modern power systems that include features such as conventional generators with unit commitment, variable wind ...
Swiss-Prot is jointly managed by the SIB (Swiss Institute of Bioinformatics) and the EBI (European Bioinformatics Institute). The database distinguishes itself from other protein sequence databases by three criteria: (i) annotations, which cover a broad range of information, (ii) minimal redundancy...
Figure: Primary Databases Examples. Image Source: Respective Database Websites. There are several primary sequence databases available that are widely used in the field of bioinformatics. The three main primary databases are GenBank at the National Center for Biotechnology Information (NCBI), the DNA...