SciDBMaker: new software for computer-aided design of specialized biological databases - Hammami, Zouhir, et al. - 2008Hammami R, Zouhir A, Naghmouchi K, Ben Hamida J, Fliss I. SciDBMaker: new software for comp
Functions of these predicted genes were analyzed using the public protein databases. InterProScan (v.4.8) was used to screen proteins against databases (Pfam, v.27.0; prints, v.42.0; prosite, v.20.97; ProDom, v.2006.1; smart, v.6.2). In addition, the Kyoto Encyclopedia of Genes and ...
Obtaining high-quality genomes from metagenomes is the next frontier in microbiology and will begin to populate sequence databases with uncultivated strains, ultimately giving us a better look into their symbiotic lives and their yet-unseen potential for bioactive metabolite production. MATERIALS AND ...
extracts of wheat-associated Pseudomonas, we demonstrate how the detailed knowledge from our reference index can be efficiently propagated to annotate complex metabolomic data from other studies, akin to the way in which newly generated genomic information can be compared to data from public databases....
Saussurea costus (Falc.) is an endangered medicinal plant possessing diverse phytochemical compounds with clinical significance and used to treat numerous
Furthermore, the diversity of genes involved in PSM biosynthesis and whether or not these genes function as PGC is still not well-understood, or at least not well annotated in public databases (Facchini et al., 2012). Taken together, the published information on PGC, approximate number of ...
BioRuby is a toolkit that has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public web services, including BLAST, KEGG, GenBank, MEDLINE and GO....
[24] was use on both a non-redundant protein database provided by NCBI and clusters of orthologous groups (COG) [25] databases. HMMER [26] was used to identify protein motifs to the PFAM libraries [27]. TMHMM [28] was used to predict transmembrane sequences, and SignalP [29] was ...
Databases, Nucleic AcidPlantsComputational BiologyDNA, SatelliteMotivation: Tandemly organized repetitive sequences (satellite DNA) are widespread in complex eukaryotic genomes. In plants, satellite repeats often represent a substantial part of nuclear DNA but only a little is known about the molecular ...
1 make homotypic gap junctions, predominantly target apical dendritic shafts of layer 3 pyramidal neurons, and inhibit backpropagating pyramidal action potentials in microdomains of the dendritic tuft. These cells are therefore positioned for potent local control of distal dendritic computation in cortical...