A biological database is a large, organized body of persistent data, usually associated with computerized software designed to update, query, and retrieve components of the data stored within the system. A simpl
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(TMB), copy number variant (CNV), microsatellite instability (MSI) score, clinical characteristics, immune phenotype, 22 immune cells, cancer stemness index, drug sensitivity, and related pathways, were systematically analyzed with publically available database and bioinformatics across 11,057 patients ...
Van der Walt et al., and this is due to the fact that the NGS-derived fragment has only 219 base pairs. For comparison, a single DNA locus tree based on ITS is only provided in Fig. 5, demonstrating that only ITS OTUs data cannot resolve the identification or classification of taxa. ...
The concept of commutativity was first introduced in distributed database systems [1], [39]. It was, however, applied to concurrency control over centralized resources, but not to consistency maintenance among replicas. In other words, to grant more concurrency to some transactions in a locking ...
The genome data suggest that variations between strains were mainly due to accumulation of SNPs, some of which resulted in gene inactivation. Unique genetic elements that were common between host-adapted phage types were not found. This study advanced our understanding on the evolution and adaptation...
The set-height of a complex object type is defined to be its level of nesting of the set construct. In a query of the complex object calculus which maps a database D to an output type T, an intermediate type is a type which is used by some variable of the query, but which is not...
Bacterial DNA methylation occurs at diverse sequence contexts and plays important functional roles in cellular defense and gene regulation. Existing methods for detecting DNA modification from nanopore sequencing data do not effectively support de novo study of unknown bacterial methylomes. In this work, ...
To pilot our method, we calculated LOD scores between donor-matched and donor-mismatched pairs of public datasets from the ENCODE12 database, which hosts data from thousands of diverse NGS experiments (Methods). Classification performance was measured in terms of the false flag rate (FFR), the ...