Transmembrane 尾-barrel (TMB) proteins are embedded in the outer membranes of mitochondria, Gram-negative bacteria, and chloroplasts. These proteins perform critical functions, including active ion-transport and passive nutrient intake. Therefore, there is a need for accurate prediction of secondary and...
(2003) Transmembrane beta-barrel proteins. Adv Protein Chem, 63, 47-70.Schulz G. E. (2003) Transmembrane β-barrel proteins . Adv. Protein Chem . 63 , 47–70Schulz, G.E. (2003) Transmembrane beta-barrel proteins. Adv. Protein Chem. 63, 47-70...
Model- ing ensembles of transmembrane beta-barrel proteins. Proteins 2008;71:1097-1112.Waldispu¨hl, J., O'Donnell, C.W., Devadas, S., Clote, P., Berger, B.: Modeling ensembles of transmembrane beta-barrel proteins. Proteins 71(3), 1097-1112 (2008)...
Transmembrane beta barrel (TMB) proteins are found in the outer membranes of bacteria, mitochondria and chloroplasts. TMBs are involved in a variety of functions such as mediating flux of metabolites and active transport of siderophores, enzymes and structural proteins, and in the translocation across...
Structure determination of TMBB proteins is challenging and hence computational methods devised for the analysis of TMBB proteins are important for complementing experimental approaches. Here, we present a novel web server called BetAware-Deep that is able to accurately identify the topology of TMBB ...
TRANSMEMBRANE BETA BARREL PROTEINSThe present disclosure provides non-naturally occurring beta barrel proteins as defined, self-complementing multipartite beta barrel proteins, uses of such proteins, and methods for designing such proteins.VOROBIEVA, ANASTASSIABAKER, DAVIDHORNE, JAMES, EA...
Transmembrane proteinsBeta-barrelsProtein structure predictionSupersecondary structurePermuted structureGreek keyAb initio modelingPseudo-energy modelWe introduce a graph-theoretic model for predicting the supersecondary structure of transmembrane β-barrel proteins—a particular class of proteins that performs ...
3D structure modeling of transmembrane beta barrel proteinsHayat, SikanderElofsson, Prof Arne
Transmembrane beta-barrel (TMB) proteins are embedded in the outer membrane of gram-negative bacteria, mitochondria, and chloroplasts. Despite their importance, very few nonhomologous TMB structures have been determined by X-ray diffraction because of the experimental difficulty encountered in ...
This paper focuses on the topology prediction of TMB proteins. In the field of bioinformatics, many years of research has been spent on the topology prediction of transmembrane alpha-helices. The efforts to TMB proteins topology prediction have been overshadowed and the prediction accuracy could be ...