Simon, "Transmembrane proteins in the Protein Data Bank: identification and classifi- cation," Bioinformatics, vol. 20, no. 17, pp. 2964-2972, 2004.Tusnady GE, Dosztanyi ZD, Simon I. 2004. Transmembrane proteins in the Protein Data Bank: identification and classification. Bioinformatics 20...
PDBTM: Protein Data Bank of transmembrane proteins after 8 years. The PDBTM database (available at http://pdbtm.enzim.hu), the first comprehensive and up-to-date transmembrane protein selection of the Protein Data Bank, w... Dániel,Kozma,István,... - 《Nucleic Acids Research》 被引量: ...
The data sets for transfer learning were obtained by downloading the structures from the Protein Data Bank of Transmembrane Proteins (PDBTM) on January 2021, which contains 5692 transmembrane protein complexes. Since we focus on the homo-oligomers of TMPs, the heterologous proteins in the PDBTM were...
Figure 1.9. Representation of (a) α-helical and (b) β-barrel membrane proteins. The membrane spanning regions are shown within the disc. Protein structures were taken from Protein Data Bank of Transmembrane Proteins (http://pdbtm.enzim.hu/). ...
E. PDBTM: Protein Data Bank of transmembrane proteins after 8 years. Nucleic Acids Res. 41, D524–D529 (2013). CAS PubMed Google Scholar Chen, L. H. et al. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res. 40, ...
(TGF-α),epiregulin,amphiregulin, among others. EGF domains are also present within transmembrane proteins such asAPPand Notch.66,134,135Once formed, the EGF protein then acts as a paracrine molecule where these ligands show remarkable binding affinity to specific receptors termed asEGF receptors. ...
Tusnády G, Kalmár L, Simon I: TOPDB: topology data bank of transmembrane proteins. Nucleic Acids Research 2007, 36(Suppl 1):D234-D239. 10.1093/nar/gkm751 Article PubMed PubMed Central Google Scholar Bastolla U, Porto M, Roman HE, Vendruscolo M: A protein evolution model with inde...
The Membrane Protein Data Bank (MPDB) is an online, searchable, relational database of structural and functional information on integral, anchored and peri
The mechanisms that the BAM complex might use in the folding and insertion of OMPs into the membrane are also discussed.Abstract The folding of transmembrane proteins into the outer membrane presents formidable challenges to Gram-negative bacteria. These proteins must migrate from the cytoplasm, throug...
Sec exportome polypeptides are synthesized as pre-proteins that have cleavable signal peptides fused to the exported mature domains. Recent advances have re-evaluated the interaction networks of pre-proteins with chaperones that are involved in pre-protein targeting from the ribosome to the SecYEG ...