PDBTM: Protein Data Bank of transmembrane proteins after 8 years. The PDBTM database (available at http://pdbtm.enzim.hu), the first comprehensive and up-to-date transmembrane protein selection of the Protein Data Bank, w... Dániel,Kozma,István,... - 《Nucleic Acids Research》 被引量: ...
Simon, "Transmembrane proteins in the Protein Data Bank: identification and classifi- cation," Bioinformatics, vol. 20, no. 17, pp. 2964-2972, 2004.Tusnady, G. E.; Dosztanyi, Z.; Simon, I. Transmembrane proteins in the Protein Data Bank: identification and classification. Bioinformatics...
Transmembrane proteins represent 20–30% of the proteome [1] but only ∼3.6% of the structures deposited in the Protein Data Bank (PDB) (according to the PDBTM database [2] as of November 2021). The structural study of transmembrane proteins is often challenging because their highly ...
The data sets for transfer learning were obtained by downloading the structures from the Protein Data Bank of Transmembrane Proteins (PDBTM) on January 2021, which contains 5692 transmembrane protein complexes. Since we focus on the homo-oligomers of TMPs, the heterologous proteins in the PDBTM were...
Representation of (a) α-helical and (b) β-barrel membrane proteins. The membrane spanning regions are shown within the disc. Protein structures were taken from Protein Data Bank of Transmembrane Proteins (http://pdbtm.enzim.hu/). Show moreView chapter...
Protein Data Bank refers to a repository of three-dimensional structural data of large biological molecules, such as proteins and nucleic acids, which is maintained by an international organization called the Worldwide Protein Data Bank. It is a valuable resource for structural biologists studying prot...
The Membrane Protein Data Bank (MPDB) is an online, searchable, relational database of structural and functional information on integral, anchored and peri
E. PDBTM: Protein Data Bank of transmembrane proteins after 8 years. Nucleic Acids Res. 41, D524–D529 (2013). CAS PubMed Google Scholar Chen, L. H. et al. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res. 40, ...
Protein Data Bank; Open Access; Worldwide Protein Data Bank; macromolecular crystallography; cryogenic electron microscopy; cryogenic electron tomography; electron crystallography; micro-electron diffraction; nuclear magnetic resonance spectroscopy; biological macromolecules; proteins; nucleic acids; DNA; RNA; ...
Comparative modeling uses the sequence of the target protein to detect proteins with similar sequence in the protein structure data bank [40]. A subclass of comparative modeling, homology modeling, uses the homology assumption that proteins with similar sequence also have similar structure. The ...