PlnTFDB is an integrative plant transcription factor database that provides a web interface to access large (close to complete) sets of transcription factors of several plant species, currently encompassing Arabidopsis thaliana (thale cress), Populus trichocarpa (poplar), Oryza sativa (rice), Chlamydomo...
we performed Hidden Markov Model scan (hmmscan) to compared the lists of DEGs with the Animal Transcription Factor DataBase [25]. Raw data for DEGs and DE-TFs can be found in the supplementary files.
Identification of peach NAP transcription factor genes and characterization of their expression in vegetative and reproductive organs during development and ... Fang,Li,Jinjin,... - 《Frontiers in Plant Science》 被引量: 1发表: 2016年 Identification and differential expression dynamics of peach small...
we performed Hidden Markov Model scan (hmmscan) to compared the lists of DEGs with the Animal Transcription Factor DataBase [25]. Raw data for DEGs and DE-TFs can be found in the supplementary files.
Understanding the mechanisms underlying differentiation of inflorescence and flower meristems is essential towards enlarging our knowledge of reproductive organ formation and to open new prospects for improving yield traits. Here, we show that SlDOF9 is
The expression level ofAlLuc1was significantly downregulated in transcriptomes ofdsAlAbd-BanddsAlUnc-4groups. Via the JASPAR database analysis, two putative DNA-binding domains were identified for each transcription factor: AlABD-B (−145 and −415, negative numbers indicate that it is upstream ...
AP2/ERF proteins of apple (Malus domestica) and Arabidopsis were obtained from the plant transcription factor database (http://plntfdb.bio.uni-potsdam.de/v3.0/). The phylogenetic relationship of RcAP2/ERF was established by the neighbor-joining method with 1000 bootstraps values and was then ...
36 Database Shaw LM, McIntyre CL, Gresshoff PM, Xue GP: Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation. Funct Integr Genomics. 2009, 9: 485-98. 10.1007/s10142-009-0130-2. Article CAS PubMed Google Scholar Riechmann ...
Transcription factor 21 (TCF21) is one of the essential transcription factors in kidney development. To elucidate its influence on glomerular disease, we have investigated TCF21 expression in human and rat kidney tissue, and its urinary concentration. Im
Inferring transcription factor regulatory networks from single-cell ATAC-seq data based on graph neural networksHao Li, Yu Sun, Hao Hong, Xin Huang, Huan Tao, Qiya Huang, Longteng Wang, Kang Xu, Jingbo Gan, Hebing Chen & Xiaochen Bo ...