Therefore, a good database for plant TFs and transcription factor binding sites (TFBSs) will be useful for starting a series of complex experiments. In this chapter, PlantPAN (version 3.0) is utilized as an example to explain how bioinformatics systems advance research on gene regulation....
Unification of independent collection of transcription factor binding sites and motifs. YeasTracthttp://www.yeastract.com/ Yeast-specific database. Factors, binding sites and motifs + tools. FlyReghttp://www.flyreg.org/ Drosophila DNase I Footprint Dat...
transcriptionfactor;(iii)integratedgenome browserthatprovidesvisualizationoftheGTRDdata: readalignments,peaks,clusters,metaclustersand informationaboutgenestructuresfromtheEnsembl databaseandbindingsitespredictedusingposition weightmatricesfromtheHOCOMOCOdatabase. INTRODUCTION Recognitiono transcription actor(TF)bindingsites...
网络转录因子结合位点 网络释义 1. 转录因子结合位点 鉴定调控序列的转录因子结合位点(Transcription Factor Binding Sites)。预测“转录因子-靶基因”转录调控关系,在此基础上 … www.biosino.com.cn|基于6个网页 例句 释义: 全部,转录因子结合位点
Second, the phrase may mean a collection of DNA sequences that conform to a common pattern (motif) and are specifically recognized by a common transcription factor. As individual binding sites for a given transcription factor are often very different, a motif is usually represented by a ...
Usually, transcription factor binding sites prediction methods based on PWMs require user-defined thresholds. The arbitrary threshold and also the relatively ... J Zheng,J Wu,Z Sun - 《Nucleic Acids Research》 被引量: 96发表: 2003年 The Planets on New Year's Day MOTIVATION: Gene regulation ...
Here, using a massively parallel reporter assay (MPRA) of 209,440 sequences, we examine all possible pair and triplet combinations, permutations and orientations of eighteen liver-associated transcription factor binding sites (TFBS). We find that TFBS orientation and order have a major effect on ...
The SOX2 pioneer transcription factor performs critical roles in pluripotency and self-renewal of embryonic stem cells. Here the authors show that SOX2’s two nuclear localization signal sequences form a contiguous binding interface on the nuclear import receptor importin-α3, and provide a structural...
In Wiki format, factorbook is a transcription factor (TF)-centric repository of all ENCODE ChIP-seq datasets on TF-binding regions, as well as the rich analysis results of these data. In the first release, factorbook contains 457 ChIP-seq datasets on 119 TFs in a number of human cell ...
Steffens NO, Galuschka C, Schindler M, Bülow L, Hehl R: AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. Nucleic Acids Res 2004, (32 (Database issue)):D368-D372. 10.1093/nar/gkh017 Dong Q, Lawrence CJ, Schlueter SD, Wilk...