GTRD:adatabaseoftranscriptionfactorbindingsites identifiedbyChIP-seqexperiments IvanYevshin 1,2 ,RuslanSharipov 1,2,3 ,TagirValeev 1,4 ,AlexanderKel 1,5 and FedorKolpakov 1,2,* 1 BIOSOFT.RU,LLC,Novosibirsk630058,RussianFederation, 2 InstituteofComputationalTechnologiesSBRAS, Novosibirsk630090,Russia...
Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. Database of repetitive elements in complete genomes and data mining using transcription factor binding sites. IEEE Trans Inf Technol Biomed. 2003; 7 (2):... - 《IEEE Transactions on ...
Database of repetitive elements in complete genomes and data mining using transcription factor binding sites JT Horng,FM Lin,JH Lin,... 被引量: 0发表: 2003年 The repetitive sequence database and mining putative regulatory elements in gene promoter regions. At least 43% of the human genome is...
Steffens NO, Galuschka C, Schindler M, Bülow L, Hehl R: AthaMap: an online resource for in silico transcription factor binding sites in the Arabidopsis thaliana genome. Nucleic Acids Res 2004, (32 (Database issue)):D368-D372. 10.1093/nar/gkh017 Dong Q, Lawrence CJ, Schlueter SD, Wilk...
Second, the phrase may mean a collection of DNA sequences that conform to a common pattern (motif) and are specifically recognized by a common transcription factor. As individual binding sites for a given transcription factor are often very different, a motif is usually represented by a ...
DNA affinity purification sequencing (DAP-seq) couples in vitro expression of transcription factor (TF) and binding to a genomic DNA library with next-generation sequencing, providing a robust method to identify genome-wide transcription factor binding sites (TFBS) on endogenous genomic DNA. Here we...
Here, using a massively parallel reporter assay (MPRA) of 209,440 sequences, we examine all possible pair and triplet combinations, permutations and orientations of eighteen liver-associated transcription factor binding sites (TFBS). We find that TFBS orientation and order have a major effect on ...
网络转录因子结合位点 网络释义 1. 转录因子结合位点 鉴定调控序列的转录因子结合位点(Transcription Factor Binding Sites)。预测“转录因子-靶基因”转录调控关系,在此基础上 … www.biosino.com.cn|基于6个网页 例句 释义: 全部,转录因子结合位点
Single nucleotide variants (SNVs) located in transcriptional regulatory regions can result in gene expression changes that lead to adaptive or detrimental phenotypic outcomes. Here, we predict gain or loss of binding sites for 741 transcription factors (TFs) across the human genome. We calculated ‘...
Software Package for Transcription Factor Binding Site (TFBS) Analysis Installation of the stable version ofTFBSToolsfrom Bioconductor if(!requireNamespace("BiocManager",quietly=TRUE)) install.packages("BiocManager")BiocManager::install("TFBSTools") ...