单个时间序列表达谱的基因共表达网络 (TO-GCN),含网络图构建方法哈。 更多时序分析教程见《生信益站》公众号! 引言 该管道包含三个步骤: (1) 确定 TO-GCN 的 PCC 截止值, (2) 使用初始 TF 种子生成 TO-GCN 级别的 TF 基因列表,以及 (3) 在每个 TO- GCN 级别生成一个基因列表。 地址:https://git...
1Branch0Tags Code Folders and files Name Last commit message Last commit date Latest commit Cannot retrieve latest commit at this time. History 39 Commits Comparative_Time_series_data Add files via upload Jul 13, 2023 Linux updates of binary files ...
GitHub - petitmingchang/TO-GCN: Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data # TFs_1718.tsv All_genes_25489.tsv使用软件自带的测试数据。 #确定分界值 Cutoff 13 13 example_data/TFs_1718.tsv example_...
TO-GCN tools for STAR-Protocol. Contribute to petitmingchang/TO-GCN_STAR-Protocol development by creating an account on GitHub.
直接git clone https://github.com/petitmingchang/TO-GCN.git 下载即可 下载后可以看到里面一共三个脚本(Fig 2):Cutoff.cpp-GCN.cpp-TO-GCN.cpp,依次运行即可。 二 测试数据 Fig 3 测试数据说明:所有基因(25489个)包含TF基因(1718个)和纯基因(23771个),有n个时间点 ...
https://www.pnas.org/content/116/8/3091#sec-1 github 用于构建时间序列共表达网络分析。适合于转录组数据挖掘。输入文件为全部的表达基因和关注的表达基因，就能得到共表达网络。
Availability of data and materials The source code is available at https://github.com/horsedayday/DualGCN. Declarations Ethics approval and consent to participate Not applicable. Consent for publication Not applicable. Competing interests The authors declare that they have no ...
If available Link to developer documentation / manual https://github.com/hht1996ok/VA-GCN/blob/VA-GCN/README.md Support email for questions hht1996ok@zju.edu.cn 1. Introduction During recent years, researchers in the field of computer vision have made major breakthroughs in 3D point cloud pr...
An open-source implementation of the SpaGCN algorithm can be downloaded fromhttps://github.com/jianhuupenn/SpaGCN. References Download references Acknowledgements This work was supported by the following grants: R01GM125301, R01EY030192, R01EY031209, R01HL113147 and R01HL150359 (to M.L.),...
GCN-V+E: Learning to cluster faces via confidence and connectivity estimation [CVPR2020] [论文链接] [github]Abstract & 概述基于图卷积,针对之前人脸聚类方法(L-GCN/GCN-D+S等)需要生成 大量重叠子图…