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单个时间序列表达谱的基因共表达网络 (TO-GCN),含网络图构建方法哈。 更多时序分析教程见《生信益站》公众号! 引言 该管道包含三个步骤:(1) 确定 TO-GCN 的 PCC 截止值,(2) 使用初始 TF 种子生成 TO-GCN 级别的 TF 基因列表,以及 (3) 在每个 TO- GCN 级别生成一个基因列表。 地址:github.com/petit...
GitHub - petitmingchang/TO-GCN: Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data # TFs_1718.tsv All_genes_25489.tsv使用软件自带的测试数据。 #确定分界值 Cutoff 13 13 example_data/TFs_1718.tsv example_...
Github地址https://github.com/petitmingchang/TO-GCN (Fig 1) 该软件支持Mac、Windows、Linux,演示在Linux中进行。 直接git clone https://github.com/petitmingchang/TO-GCN.git 下载即可 下载后可以看到里面一共三个脚本(Fig 2):Cutoff.cpp-GCN.cpp-TO-GCN.cpp,依次运行即可。 二 测试数据 Fig 3 测试数...
https://www.pnas.org/content/116/8/3091#sec-1 github 用于构建时间序列共表达网络分析。适合于转录组数据挖掘。输入文件为全部的表达基因和关注的表达基因，就能得到共表达网络。
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Availability of data and materials The source code is available at https://github.com/horsedayday/DualGCN. Declarations Ethics approval and consent to participate Not applicable. Consent for publication Not applicable. Competing interests The authors declare that they have no ...
The datasets generated during and/or analysed during the current study are available from the https://virtualhumans.mpi-inf.mpg.de/3DPW/, https://github.com/chaneyddtt/Convolutional-Sequence-to-Sequence-Model-for-Human-Dynamics and http://vision.imar.ro/human3.6m/description.php. All the fi...
An open-source implementation of the SpaGCN algorithm can be downloaded fromhttps://github.com/jianhuupenn/SpaGCN. References Download references Acknowledgements This work was supported by the following grants: R01GM125301, R01EY030192, R01EY031209, R01HL113147 and R01HL150359 (to M.L.),...
比较转录组分析工具:TO-GCN https://www.pnas.org/content/116/8/3091#sec-1 github 用于构建时间序列共表达网络分析。适合于转录组数据挖掘。输入文件为全部的表达基因和关注的表达基因,就能得到共表达网络。