单个时间序列表达谱的基因共表达网络 (TO-GCN),含网络图构建方法哈。 更多时序分析教程见《生信益站》公众号! 引言 该管道包含三个步骤: (1) 确定 TO-GCN 的 PCC 截止值, (2) 使用初始 TF 种子生成 TO-GCN 级别的 TF 基因列表,以及 (3) 在每个 TO- GCN 级别生成一个基因列表。 地址:https://git...
Name Last commit message Last commit date Latest commit petitmingchang Add files via upload Jul 13, 2023 6152347·Jul 13, 2023 History 39 Commits Comparative_Time_series_data Add files via upload Jul 13, 2023 Linux updates of binary files ...
GitHub - petitmingchang/TO-GCN: Pipeline of time-ordered gene coexpression network (TO-GCN) construction from three-dimensional (gene expression, condition, and time) data # TFs_1718.tsv All_genes_25489.tsv使用软件自带的测试数据。 #确定分界值 Cutoff 13 13 example_data/TFs_1718.tsv example_...
Github地址https://github.com/petitmingchang/TO-GCN (Fig 1) 该软件支持Mac、Windows、Linux,演示在Linux中进行。 直接git clone https://github.com/petitmingchang/TO-GCN.git 下载即可 下载后可以看到里面一共三个脚本(Fig 2):Cutoff.cpp-GCN.cpp-TO-GCN.cpp,依次运行即可。 二 测试数据 Fig 3 测试数...
https://www.pnas.org/content/116/8/3091#sec-1 github 用于构建时间序列共表达网络分析。适合于转录组数据挖掘。输入文件为全部的表达基因和关注的表达基因,就能得到共表达网络。
PyOpenCL: https://github.com/pyopencl/pyopencl Forked amdcovc for lifting power limit: https://github.com/hyln9/amdcovc Usage ./kernel.pl ./gemm.py [options] output.clo About Optimized half precision gemm assembly kernels (deprecated due to ROCm) Topics deep-learning hpc gpu-computing hobb...
The host program should also allocate memory for thein,indexandoutbuffers. In the GitHub repository, all the run-time-related stuff is hidden in the Dispatch and Buffer classes, so the sample code looks much cleaner: // Create Kernarg segment ...
GCN-V+E: Learning to cluster faces via confidence and connectivity estimation [CVPR2020][论文链接] [github] Abstract & 概述 基于图卷积,针对之前人脸聚类方法(L-GCN/GCN-D+S等)需要生成大量重叠子图的问题,进行聚类框架的改进设计。将聚类问题分成两个子问题:节点置信度和边的连接预测,用了两个GCN(GCN-...
second of RTG’s presentations that we coveredwas focused on their software development plans, including Linux driver improvements and the consolidation of all of RTG’s various GPU libraries and SDKs under the GPUOpen banner, which will see these resources released on GitHub as open source ...
github 用于构建时间序列共表达网络分析。适合于转录组数据挖掘。输入文件为全部的表达基因和关注的表达基因,就能得到共表达网络。©著作权归作者所有,转载或内容合作请联系作者 7人点赞 RNA-seq 更多精彩内容,就在简书APP "欢迎各位打赏。欢迎有偿咨询问题。"赞赏支持还没有人赞赏,支持一下 ...