geoomnibusgeneexpressionrepositoryabundance TheGeneExpressionOmnibus(GEO):AGeneExpressionand HybridizationRepository [Chapter6] RonEdgar AlexLash Summary TheGeneExpressionOmnibus(GEO)projectwasinitiatedatNCBIin1999inresponsetothe growingdemandforapublicrepositoryfordatageneratedfromhigh-throughputmicroarray experiments.GE...
The Gene Expression Omnibus (GEO): A Gene Expression and Hybridization Repository Ron Edgar and Alex Lash Created: October 9, 2002 Updated: August 13, 2003 Summary The Gene Expression Omnibus (GEO) project was initiated at NCBI in 1999 in response to the growing demand for a public repository...
Summary The Gene Expression Omnibus (GEO) project was initiated at NCBI in 1999 in response to the growing demand for a public repository for data generated from high-throughput microarray experiments. GEO has a flexible and open design that allows the submission, storage, and retrieval of many ...
The Gene Expression Omnibus (GEO) accession numbers for the two human kidney datasets are GSE121862 and GSE151302. The GEO accession number for the mouse kidney data is GSE107585. The GEO accession number for the human neocortex data is GSE97942. The human heart data can be accessed at ...
The Gene Expression Omnibus (GEO) accession numbers for the two human kidney datasets are GSE121862 and GSE151302. The GEO accession number for the mouse kidney data is GSE107585. The GEO accession number for the human neocortex data is GSE97942. The human heart data can be accessed at ...
Omics repositories such as the NCBI Gene Expression Omnibus (GEO)1and EBI ArrayExpress2accumulate and serve gene expression data from thousands of studies. It is clear that these data contain much more information than what has typically been extracted from each individual dataset for the accompanying...
Expression profiles were downloaded from the Gene Expression Omnibus (GEO), and differentially expressed genes (DEGs) were identified by R packages (Affy and limma). Gene functional enrichments of each dataset were performed on the DAVID database. Protein–protein interaction (PPI) network was const...
GEO: Gene expression omnibus t-SNE: T-distributed random neighborhood embedding PRR: Pattern recognition receptors MDA5: Melanoma-differentiation-associated gene 5 KPNA2: Karyopherin subunit alpha 2 ISGs: Interferon-stimulated genes HCV: Hepatitis C virus IAV: Influenza A virus iRhom2: ...
The Gene Expression Omnibus (GEO) (https://www.ncbi.nlm.nih.gov/gds)34is a public database of the National Center of Biotechnology Information that stores high-throughput gene expression datasets. To profile the variation ofGPX7expression during the cell cycle in T98G cells (Human GBM Cell li...
Data on the gene expression profiles of RA synovial tissue samples were acquired from the gene expression omnibus (GEO) database. The RA database was acquired by obtaining the common LMRDEGs, and selecting the gene collection through an SVM model. Conducting the functional enrichment analysis, ...