The site had not been most likely previously occupied by a tree as we did not find relict root channels, root baumstains, or hydromorphic changes. On the upslope site of the fir stump, a record of the bioprotective function of the tree can be found (Fig. 4a). Fig. 3 The ...
The tree was derived from the fossil-calibrated BEAST analysis using †Eophyllium messelense (47 mya) (Supplementary Fig. 4). The 95% credibility intervals and node support values with <1 PP (posterior probability) are depicted at the nodes. The results of the biogeographical analysis under ...
The circular phylogenetic tree in Fig. 2C was produced using GraPhlAn (Graphical Phylogenetic Analysis) [38], to illustrate the relationship between each microbial feature and overall citrus consumption (https://huttenhower.sph.harvard.edu/graphlan). We employed Pearson correlation analysis to examine ...
Our maximum likelihood analyses on nucleotides were primarily based on nucleotide position two due to the presence of saturation (see results, supplementary text, and Supplementary Fig. S4). We used IQ-Tree as described as above, but with ModelFinder performed on the partitioned, concatenated ...
Fig. 1: Phylotenetic tree of the banana (Musa acuminata) MYBs (Pucker et al., 2020). In addition to the R2R3 MYBs, there are also MYB3R (cell cycle control), MYB4R (SNAP complex), and various others. However, these lineages have not expanded substantially in plants. More informat...
Fig. 2 Schematic of the burdock database Full size image Applications of the burdock database Genome This module contains the first high-quality chromosome-level draft genome of A. lappa obtained using Illumina and PacBio sequencing data. The assembled genome is approximately 1.79 Gb, with 1.12 ...
Bowtie 2.1.0 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml RRID: SCR_005476 DeconSeq v0.4.3 http://deconseq.sourceforge.net RRID: SCR_007006 Trinity v 2.0.6 [38, 39] https://github.com/trinityrnaseq/trinityrnaseq/wiki BLAST 2.2.30+ http://blast.ncbi.nlm.nih.gov/Blast....
Trees were visualized using the FigTree program. Kinase expression mRNA levels during development were calculated from Affymetrix microarray data [47], which are deposited in NCBI GEO as series GSE9623, or data generated for this study by qRT-PCR. This employed DNAse-treated RNA from nonspor...
While the IL-4 level first decreased at day 16 and then increased at day 30 post-transport, at the same time, the TNF-α level showed opposite trend. Moreover, the levels of IL-1β and IL-6 were lowest at day 30 during the receiving period (Fig. 1D)....
A Figtree generated phylogeny based on protein similarity: tree shows the various clades of the CCD family. Proteins indicated with “*” have not been isolated and are based on sequence prediction software. The CCDs are named according to their closest orthologue in Arabidopsis thaliana. Full si...