This T2T super-pangenome has expanded the previously published reference genome, T2T-G42, by adding 399.2Mb and 11,225 genes. Comparative analysis has unveiled gene variants and structural variations (SVs), shedding light on watermelon evolution and domestication processes that enhanced attributes ...
Here, we describe a reference-unbiased super-pangenome of North American wild grapes in the genusVitiswith as a main objective to identify and analyze the interspecific genetic variability. To build the super-pangenome, we first sequenced and assembled diploid, chromosome-scaled genomes from nine r...
it was highlighted that a super-pangenome that includes genomic information of many diverse species, especially wild relatives within a genus, could expedite crop improvement23. Therefore, it is necessary to assemble additional reference genomes for tomato wild relatives to...
CHONGQING, Oct. 14 (Xinhua) -- A Chinese research team has completed the genome analysis of silkworm germplasm resources on a large scale and drawn the world's first super pan-genome map of the silkworm, said Southwest University. The study was recently published in the journal Nature Communic...
Genome to Pangenome: A Paradigm Shift SVs Drive the Dispensable Genome Pangenome Development: Approaches and Critical Factors Walking on the Wild Side by Exploiting CWRs Current Status of the Pangenome in Crop Plants Super-Pangenome: A Way Forward Concluding Remarks Acknowledgments Supplemental Informat...
Finally, we developed a user-friendly web-based tool encompassing the multi-omics resources associated with the Populus super-pangenome (http://www.populus-superpangenome.com). Together, the present pioneering super-pangenome resource in forest trees not only aids in the advancement of breeding ...
Breadcrumbs SuperPangenomeofGrapevines / eQTL_geneStructure.RTop File metadata and controls Code Blame 965 lines (756 loc) · 27.8 KB Raw library(MatrixEQTL) library(tidyverse) library(readxl) library(DESeq2) library(patchwork) SNP_file_name<-"D:/Jupyter/IAAS/grape/20230726.reanalysis/scripts...
Repository files navigation README SuperPangenomeofGrapevinesAbout No description, website, or topics provided. Resources Readme Activity Stars 1 star Watchers 1 watching Forks 1 fork Report repository Releases No releases published Packages No packages published Languages R 55.3% Python 30...
And based on this, a graph pangenome was constructed, and then 184,736 presence/absence variations (PAVs) were identified in 10,548 accessions. Here, the user can query and download the following information: 1.Material information (356 accessions dataset or 10,548 accessions) 2.SNP and ...
Like other obligate intracellular bacteria, the Chlamydiae feature a compact regulatory genome that remains uncharted owing to poor genetic tractability. Exploiting the reduced number of transcription factors (TFs) encoded in the chlamydial (pan-)genome as a model for TF control supporting the intracellu...