The super-pangenome of Populus unveils genomic facets for its adaptation and diversification in widespread forest trees Molecular Plant Volume 17, Issue 5, 6 May 2024, Pages 725-746 Purchase options CorporateFor R&D professionals working in corporate organizations. Academic and personalFor academic or...
Evolution of the Populus Genome: From a Reference to Holo- to Meta- to Pan-GenomesTuskan, Gerald A
Conclusions The slow nucleotide substitution rate makes the sacred lotus a better resource than the current standard, grape, for reconstructing the pan-eudicot genome, and should therefore accelerate comparative analysis between eudicots and monocots.Similar...
In the P. mume genome, we identified 253 leucine-rich repeat receptor-like kinase (LRR-RLK) genes, comparable with the number in Arabidopsis thaliana30 (221) and Theobroma cacao31 (253) and less than in Populus trichocarpa32 (436) (Supplementary Table S16). The LRR-XI and LRR-XII sub...
However, the functions of SET domain-containing (StSET) genes in potato still need to be studied. The objectives of our study can be summarized as in silico analysis to (i) identify StSET genes in the potato genome, (ii) systematically analyse gene structure, chromosomal distribution, gene ...
www.nature.com/scientificreports OPEN Molecular evolution and expression divergence of the Populus euphratica Hsf genes provide received: 05 March 2016 insight into the stress acclimationaccepted:29June2016 of desert poplarPublished:18July2016 Jin Zhang1,2,*, Huixia Jia1,2,*, Jianbo Li1,Yu...
While the rootstock genotype (belowground part of a plant) can impact rhizosphere microbial communities, few studies have examined the relationships between rootstock genotype-based recruitment of active rhizosphere bacterial communities and the availabi
The 2.5 kb upstream promoter sequences from the transcription start site of 9 CsGRF genes were extracted for cis-acting elements analysis by using the ‘Sequence Fetch’ tool of Citrus Pan-genome to Breeding Database. Two plant cis-elements online database, New PLACE (https://www.dna.affrc...
Evolutionary analysis showed that a recent whole-genome duplication event may have occurred in celery, which could have contributed to its large genome size. The genome sequence of celery allowed us to identify agronomically important genes involved in disease resistance, flavonoid biosynthesis, terpenoid...
TheT. mongolicusgenome was searched for protein homologs by aligning the protein sequences of seven homologous species (Arabidopsis thaliana,Buddleja alternifolia,Cannabis sativa,Lactuca saligna,Populus deltoides,Salvia splendens, andT. quinquecostatus) using Miniprot (version 2) [62]. De novo gene pr...