This T2T super-pangenome has expanded the previously published reference genome, T2T-G42, by adding 399.2Mb and 11,225 genes. Comparative analysis has unveiled gene variants and structural variations (SVs), shedding light on watermelon evolution and domestication processes that enhanced attributes ...
a, Modeling of pangenome and core-genome sizes when incorporating additional genomes into clustering and composition of the tomato super-pangenome (pie chart).b, Number of different types of structural variants within each genome compared with theS. galapagensereference genome.c, Distribution of st...
Here, we describe a reference-unbiased super-pangenome of North American wild grapes in the genusVitiswith as a main objective to identify and analyze the interspecific genetic variability. To build the super-pangenome, we first sequenced and assembled diploid, chromosome-scaled genomes from nine r...
CHONGQING, Oct. 14 (Xinhua) -- A Chinese research team has completed the genome analysis of silkworm germplasm resources on a large scale and drawn the world's first super pan-genome map of the silkworm, said Southwest University. The study was recently published in the journal Nature Communic...
Genome to Pangenome: A Paradigm Shift SVs Drive the Dispensable Genome Pangenome Development: Approaches and Critical Factors Walking on the Wild Side by Exploiting CWRs Current Status of the Pangenome in Crop Plants Super-Pangenome: A Way Forward Concluding Remarks Acknowledgments Supplemental Informat...
Finally, we developed a user-friendly web-based tool encompassing the multi-omics resources associated with the Populus super-pangenome (http://www.populus-superpangenome.com). Together, the present pioneering super-pangenome resource in forest trees not only aids in the advancement of breeding ...
Breadcrumbs SuperPangenomeofGrapevines / eQTL_geneStructure.RTop File metadata and controls Code Blame 965 lines (756 loc) · 27.8 KB Raw library(MatrixEQTL) library(tidyverse) library(readxl) library(DESeq2) library(patchwork) SNP_file_name<-"D:/Jupyter/IAAS/grape/20230726.reanalysis/scripts...
Repository files navigation README SuperPangenomeofGrapevinesAbout No description, website, or topics provided. Resources Readme Activity Stars 1 star Watchers 1 watching Forks 1 fork Report repository Releases No releases published Packages No packages published Languages R 55.3% Python 30...
Regulatory (pan-)genome of an obligate intracellular pathogen in the PVC superphylum Like other obligate intracellular bacteria, theChlamydiaefeature a compact regulatory genome that remains uncharted owing to poor genetic tractability. Exploiting the reduced number of transcription factors (TFs) encoded ...
This study offers valuable insights into the genetic diversity and potential avenues for crop improvement in chickpea.#Cicersuper-pangenome constructed using genome assemblies of eightCicerannual wild species and two cultivated chickpea species provides insights into the genetic diversity and agronomic ...