it was highlighted that a super-pangenome that includes genomic information of many diverse species, especially wild relatives within a genus, could expedite crop improvement23. Therefore, it is necessary to assemble additional reference genomes for tomato wild relatives to...
Genome assembly of nine wild species and two domesticated accessions of tomato generated a super-pangenome for the tomato clade. Comparative analyses revealed the landscape of structural variations in wild and cultivated tomatoes and led to the discovery of a wild tomato gene that has the potential...
Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species Article Open access 06 April 2023 Identifying genetic variants underlying phenotypic variation in plants without complete genomes Article 13 April 2020 Exploiting the diversity of tomat...
4.Graph_pangenome figures added Jun 17, 2022 5.Genetic_analysis rename folder Jan 20, 2022 figs figures added Jun 17, 2022 .DS_Store Readme updated Jan 19, 2022 .gitattributes Initial commit Jan 19, 2022 .gitignore Create .gitignore ...
Molecular biologist James Giovannoni with the ARS Plant, Soil and Nutrition Research Laboratory and BTI bioinformatics scientist Zhangjun Fei, both in Ithaca, New York, have finished constructing the pan-genome for the cultivated tomato and its wild relatives, mapping almost 5,000 previously undocument...
Su1†, Baoan Wang1†, Xiaolin Geng1†, Yuefan Du1, Qinqin Yang1, Bin Liang1, Ge Meng1, Qiang Gao2, Wencai Yang1*, Yingfang Zhu3* and Tao Lin1* Abstract Background: Genetic and functional genomics studies require a high-quality genome assembly...
(phasiRNAs). On the other hand, there were no significant genome-wide changes in tomato methylome at 14 days post infection, the time point at which the symptoms were general, and the amount of viral DNA had reached its maximum level, but we were able to identify differentially methylated ...
Modern tomatoes have narrow genetic diversity limiting their improvement potential. We present a tomato pan-genome constructed using genome sequences of 725 phylogenetically and geographically representative accessions, revealing 4,873 genes absent from
Super-pangenome analyses highlight genomic diversity and structural variation across wild and cultivated tomato species Open access08 June 2023 Main Missing heritability—the discrepancy between heritability estimates from family-based genetic studies and the variance explained by all of the significant varia...
Among the Solanaceae plants, the pepper genome is three times larger than that of tomato. Although the gene repertoire and gene order of both species are well conserved, the cause of the genome-size difference is not known. To determine the causes for the expansion of pepper euchromatic regions...