NGS_immune_repertoire stereo-xcr-seq Dec 24, 2024 analysis_script stereo-xcr-seq Dec 24, 2024 cyclone_immune_repertoire stereo-xcr-seq Dec 24, 2024 meta_build stereo-xcr-seq Dec 24, 2024 LICENSE Initial commit Dec 24, 2024 README.md Update README.md Dec 24, 2024 Repository files navigat...
master article A1_synthetic_data A2_human_lymph_node A3_human_breast_cancer A4_mouse_brain A5_visium_hd A6_slide_seqv2 A7_stereo_seq stereo_seq_analysis.ipynb readme.md chrysalis docs gallery misc plots .gitignore .readthedocs.yaml LICENSE MANIFEST.in README.md pyproject.toml requirements.txt...
图像分割 + 分子图谱就完成了,示例代码在https://github.com/STOmics/CellBin/?tab=readme-ov-file 生活很好,有你更好
Stereo-XCR-seqis an innovative approach designed to overcome the lack of tools forin situ single-cell T/BCR (XCR) sequencing. This efficient strategy retrieves and sequencesTCRandBCRfrom Stereo-seq cDNA libraries at subcellular resolution. Stereo-XCR-seq provides unbiased full-length XCR reads al...
wget https://github.com/STOmics/CellBin/archive/refs/heads/dev.zip unzip dev.zip # python3.8inconda env conda create--name=CellBin python=3.8conda activate CellBin cd CellBin-dev pip install-r requirements.txt # install conda install--channel conda-forge pyvips==2.2.1 ...
crop=((2_000, 6_000), (10_500, 15_000)), cmap=cmap, scalebar_kwargs={"location": "upper left"}, ) _ = embryo.plot_assignment_score() 示例代码在GitHub - HiDiHlabs/sainsc: Segmentation-free Analysis of In Situ Capture data 生活很好,有你更好...
${pythonDir}/python ${scriptDir}/seq_search.py ${rawdataDir}/${sampleID}_read_2.fq.gz ${sampleID}_read_2.fixed.fq.gz ${sequence} python seq_search.py ${sampleID}_read_2.fq.gz ${sampleID}_read_2.fixed.fq.gz ${sequence} date echo "=== Step1 done ===" # Step2: Barcode...
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大概是2022年左右的stereo-seq数据,当时的数据格式还是gem,现在的数据都是gef。现在想重新分析,需要转换下格式。 软件版本: SAW: 7.1 SAW为singularity镜像,具体下载方式可以参考官方github:github.com/STOmics/SAW gem格式为gzip压缩文件,转换为gef命令为: ...
Stereo-seq数据集获取网址:https://db.cngb.org/stomics/artista/ 。 本研究原始数据通过CNSA数据库获得,数据编号为CNP0002068;分析代码获取网址:https://github.com/BGI-DEV-REG/ARTISTA。 ►►► 特别关注 9月16日,ICG-17青年学...