library_ID:文库ID,必须是唯一的,不能重复。 title:数据集的简短描述,格式为 {methodology} of {organism}: isample info},例如 RNA-Seq of mus musculus: adult female spleen。 library_strategy:文库策略,如 RNA-Seq。 library_source:文库来源,如 GENOMIC。 library_selection:文库选择,如 PCR。 library_lay...
(2) 文库ID（library ID）：无特定格式要求。(3) 标题（title）：建议采用 {methodology} of {organi...
B站:https://space.bilibili.com/446219753?spm_id_from=333.1007.0.0 公众号: 知乎视频1.5 万播放 · 6 赞同视频 最近在服务中下载SRA数据总是出现下载不了,一直存在一下网络的原因,以及下载速度非常的慢的情况,因此,使用本地下载,在上传到服务器中是必要的选择方式。 2022-04-27T08:27:56 prefetch.2.8...
SRR20950111_S1_L001_R2_001.fastq.gz /share/home/sunxiao/SOFTWARES/genomics_tools/cellranger-7.1.0/cellranger count --id=SRR20950111 --transcriptome=/share/home/sunxiao/SOFTWARES/database/refdata-gex-GRCh38-2020-A --fastqs=/share/home/sunxiao/HL/PRJNA701452/step1_SOAPnuke/SRR20950111 --sam...
tax_id:10090 scientific_name:Mus musculus fastq_ftp:ftp.sra.ebi.ac.uk/vol1/fastq/SRR593/008/SRR5933808/SRR5933808_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR593/008/SRR5933808/SRR5933808_2.fastq.gz sra_ftp:ftp.sra.ebi.ac.uk/vol1/srr/SRR593/008/SRR5933808 ...
SRA Photo Library (1997)McVicar, DeniseBarden, JocelynMorris, MarkJournal of Speech-Language Pathology & Audiology
library(SRAdbV2) oidx = Omicidx$new() 创建好Omicidx实例后,就可以使用oidx$search()来进行数据检索 query=paste( paste0('sample_taxon_id:', 10116), 'AND experiment_library_strategy:"rna seq"', 'AND experiment_library_source:transcriptomic', ...
collection("bar") // <- Get collection pointer. mongo.mongodb // <- Returns original MongoDb driver mongo.ObjectID // <- Shortcut for ObjectID mongo.getConnectionString() // <- Get connection string that has been used mongo.close() // <- Close db connection...
$ cat runinfo.txt|head Run,ReleaseDate,LoadDate,spots,bases,spots_with_mates,avgLength,size_MB,AssemblyName,download_path,Experiment,LibraryName,LibraryStrategy,LibrarySelection,LibrarySource,LibraryLayout,InsertSize,InsertDev,Platform,Model,SRAStudy,BioProject,Study_Pubmed_id,ProjectID,Sample,BioSample,Sa...
Project ID:项目ID(http://.ncbi.nlm.nih.gov/sites/entrez?db=bioproject)。 新的项目(Projects)可至(https://submit.ncbi.nlm.nih.gov/subs/bioproject/)创建。 Links and Attributes:用于添加URLs、Entrez 链接或其它属性,以“键-值对”的方式