We have identified about 20 million rice SNPs by aligning reads from the 3000 rice genomes project with the Nipponbare genome. The SNPs and allele information are organized into a SNP-Seek system (http://www.oryzasnp.org/iric-portal/), which consists of Oracle database having a total number...
A large resource of ESTs is to become available in catfish allowing identification of large number of SNPs, but reliability of EST-derived SNPs are relatively low because of sequencing errors. This project was designed to answer some of the questions relevant to quality assessment of EST-derived...
Microsatellite markers are popular for assigning parentage, but single-nucleotide polymorphisms (SNPs) have only been applied in this area recently. To eva... Chen, LingWu, LixiaHou, RongShen, FujunZhang, WenpingTang, YaoYuan, YaohuaZhao, BoZhang, Liang - 《Conservation Genetics Resources》 被引...
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The results show the following: (i) Drug targets undergo strong purifying selection, and the majority (92.4%) of the SNPs are located far from the drug-binding sites (>12 Å). (ii) For SNPs near the drug-binding pocket (≤12 Å), nearly half of the drugs are weakly affected by ...
Disease/candidate gene relationships and gene-gene relationships are derived from the literature using simple but effective text profiling. SNP/protein function relationships are derived by two methods, one using principles of protein structure and stability, the other based on sequence conservation. ...
(TF) ChIP-seq, on specific SNPs of interest. For instance, verifying a novel GAS motif in an enhancer region would require access to cells from an individual carrying the SNP, but such data or materials are not available in dbSNP or similar resources. Conducting such studies further depends ...
Disease/candidate gene relationships and gene-gene relationships are derived from the literature using simple but effective text profiling. SNP/protein function relationships are derived by two methods, one using principles of protein structure and stability, the other based on sequence conservation. ...
h, Quantification of RT–PCR products using iPS cell-derived neurons made from an independent iPS cell line, NCRM5, with a non-targeting control short guide RNA (sgRNA) (sgTARDBP−), an intermediate TDP-43 knockdown (sgTARDBP+) or stronger TDP-43 knockdown (sgTARDBP++). Data are mean...
They are ... T Asp,UK Frei,T Didion,... - 《Bmc Plant Biology》 被引量: 126发表: 2007年 Preliminary analysis of microsatellite markers derived from sugarcane expressed sequence tags (ESTs) Expressed sequence tags (ESTs) in the sugarcane (Saccharum spp) database (SUCEST) were electronically...