SNP-dCAPS-Fnu4HI,330-gcngc-298-0 163 RIGHT 441 422 0 YES 20 59.888 55.0 0.0 0.0 3.36 0.0 ggaaaggttgctgggaggaa ttcctcccagcaacctttcc 0.291627 6.81 4.00 R2 Sites that can differ all for SNP CAPS cut information for snp SNP Enzyme Enzyme_seq Change_pos Other_cut_pos Cac8I,710 gcnngc...
Namespace/Package:snppipelineutils Method/Function:sample_error_on_file_contains 导入包:snppipelineutils 每个示例代码都附有代码来源和完整的源代码,希望对您的程序开发有帮助。 示例1 defcall_sites(args):"""Find the sites with SNPs in a sample. The sample alignment is sorted, duplicate reads are r...
*pFst <<"var_num"<<"\t"<<"scaffold"<<"\t"<<"Start"<<"\t"<<"End"<<"\t"<<"Fst"<<"\t"<<"Dxy_onlyVaiants"<<"\t"<<"Dxy_AllSites"<<"\t"<<"windowSize"<<std::endl;if(opt::regAbove >0) *regionsAboveFstFile <<"scaffold"<<"\t"<<"Start"<<"\t"<<"End"<<std::...
转录因子结合位点 Transcription factor binding sites identified by ChIP-seq in ENCODE project SNP 位点上下 10bp 区域的保守性得分 PhyP scores of 46 vertebrates and 33 mammals across the +/-10bp region surrounding the SNP 总而言之,对于例子中的 rs12740374,我们可以看到关于这个突变的总分主要在于 TFBS...
链接:https://pan.baidu.com/s/1eJGIOs2O8cULYbAbc83JCA 密码:ru01 输出文件chr5D:9950377.txt示例:#Marker Enzyme Total size Restriction Sites Expected Fragments Members Predicted CAPS candidates --- chr5D:9950377 AbaCIII 301 153 153,148 Alt chr5D:9950377 AbaCIII 301 301 Ref...
Sites that can differallforSNP CAPS cut informationforsnp SNP Enzyme Enzyme_seq Change_pos Other_cut_pos Cac8I,710gcnngc295BseYI,660cccagc298427HhaI,HinP1I,29gcgc297412PsiI,560ttataa304HpaI,122gttaac303CviKI-1,272rgcy298361,229,262,514,105,210,179,246,64Hpy166II,68gtnnac303 ...
Transcription factor binding sites identified by ChIP-seq in ENCODE project SNP 位点上下 10bp 区域的保守性得分 PhyP scores of 46 vertebrates and 33 mammals across the +/-10bp region surrounding the SNP 总而言之,对于例子中的 rs12740374,我们可以看到关于这个突变的总分主要在于 TFBS (86.23)、增强子...
输出文件chr5D:9950377.txt示例:#Marker Enzyme Total size Restriction Sites Expected Fragments MembersPredicted CAPS candidates ---chr5D:9950377 AbaCIII 301 153 153,148 Altchr5D:9950377 AbaCIII 301 301 Refchr5D:9950377 AciI 301 148 153,148 Altchr5D:9950377 AciI 301 301 Refchr5D:9950377 BscGI ...
call_sites(args):"""Find the sites with SNPs in a sample. The sample alignment is sorted, duplicate reads are removed, a pileup is generated, and snps are called. This function expects, or creates '(*)', the following files arranged in the following way: reference referenceFile.fasta sa...