The invention discloses disease susceptibility associated SNP sites, especially relates to coronary heart disease susceptibility substantially-associated SNP sites of a susceptible region chr5p15, and applications of the SNP sites in the assessment of the susceptibility of the coronary heart disease, and...
Population Data: 1000 Genomes、HapMap、ExAC Regulatory Elements:miRBASE 21.0、 CpG Islands、TarBase miRNA Target Sites、microRNAs (miRNA Registry) / snoRNAs and scaRNAs (snoRNA-LBME-DB)、ENCODE、Roadmap Epigenomics、Ensembl - Regulatory Build Conservation:Vertebrate Alignment and Conservation (PHAST) P...
SNPs can be extracted from a 8.3 GB alignment file (1842 taxa, 22 618 sites) in 267 seconds using 59 MB of RAM and 1 CPU core, making it feasible to run on modest computers. It is easy to install through the Debian and Homebrew package managers, and has been successfully tested on ...
13 SNP sites multiple colour fluorescent composite amplification reagent kit used for personal recognition本发明涉及一种用于体外一次性多色荧光复合扩增具有较高个人识别能力的13个SNP基因座的试剂盒,是由分离包装的引物混合物,DNA聚合酶,缓冲液,质控DNA样品和等位基因分型标准物混合物构成. The present invention ...
Regulatory Elements:miRBASE 21.0、 CpG Islands、TarBase miRNA Target Sites、microRNAs (miRNA Registry) / snoRNAs and scaRNAs (snoRNA-LBME-DB)、ENCODE、Roadmap Epigenomics、Ensembl - Regulatory Build Conservation:Vertebrate Alignment and Conservation (PHAST) ...
Regulatory Elements:miRBASE 21.0、 CpG Islands、TarBase miRNA Target Sites、microRNAs (miRNA Registry) / snoRNAs and scaRNAs (snoRNA-LBME-DB)、ENCODE、Roadmap Epigenomics、Ensembl - Regulatory Build Conservation:Vertebrate Alignment and Conservation (PHAST) ...
不同序列一致性下,阳性预测值 (PPV):检测到的 SNP 真阳性位点与所有检测到的 SNP 位点的比率;灵敏度:检测到的 SNP 真阳性位点与所有真实 SNP 位点的比率;Called-sites:在所有分离物中明确确定核苷酸的位点与参考基因组大小的比例。所有统计数据都是十次重复的平均值。
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再执行以下命令构建进化树：其中，snippy，snippy-core，snippy-multi，snippy-clean_full_aln命令可以在~ /snippy/bin/目录下找到，snp-sites命令在~/snippy/binaries/linux/目录下，run_gubbins.py需要另外安装gubbins（conda install -c bioconda gubbins），如果找不到FastTree也需另外安装。
549904 out of a possible 2827014 Sites 15Min 基因型填充 代码语言:javascript 代码运行次数:0 运行 AI代码解释 time java-Xmx48g-jar~/anaconda3/envs/syri/share/beagle-5.2_21Apr21.304-0/beagle.jar gt=chr3.snp.filter.recode.vcf out=chr3.snp.filter.impute nthreads=24 ...